Nextflow module for phylo_wgs create_phylowgs_inputs.py

mskcc / neoantigen-pipeline

Pipeline for computing neoantigen qualities from DNA and RNA-Seq data

MIT License

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Nextflow module for phylo_wgs create_phylowgs_inputs.py #12

Closed nikhil closed 8 months ago

nikhil commented 9 months ago

Dockerhub Container: mskcc/phylowgs:v1.3-msk command: python2 /usr/bin/parser/create_phylowgs_inputs.py --cnvs S1=[cnvs.txt from parse_cnvs] --vcf-type S1=maf S1=[tempo unfiltered.maf] output: cnvs.txt

nikhil commented 8 months ago

Resolved with: https://github.com/mskcc-omics-workflows/modules/pull/51