mskcc / nf-fastq-plus

Generate IGO fastqs, bams, stats and fingerprinting
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Sending alerts to DATA_QC_ALERTS for missing FASTQ files #206

Closed DavidStreid closed 3 years ago

DavidStreid commented 3 years ago

Description: After modifying how a sample's FASTQ files are located, the old method of emailing when FASTQ files were missing did not work.

Change: Cross-reference SAMPLESHEET to find identify entries not present in the list of SAMPLE_TAG's