See full error log in /juno/work/pi/prototypes/mskcc-cwl/test_runs/cmo_resources.json.err.log
It looks like some imports are still using cmo_resources.json, which is located in /opt/common/CentOS_6-dev/cmo/. I believe it worked before because /opt/common is considered a "singularity bind", but again I'm still not sure we can import these environmental variables and consider roslin-cwl portable.
We will need to figure out a way to remove this dependency.
See full error log in
/juno/work/pi/prototypes/mskcc-cwl/test_runs/cmo_resources.json.err.log
It looks like some imports are still using
cmo_resources.json
, which is located in/opt/common/CentOS_6-dev/cmo/
. I believe it worked before because/opt/common
is considered a "singularity bind", but again I'm still not sure we can import these environmental variables and consider roslin-cwl portable.We will need to figure out a way to remove this dependency.