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mskcc / roslin-cwl

CWLs for the Roslin Variant Pipeline
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Wrong CWL Version cwl:v1.0 should be v1.0 #8

Open sivkovic opened 5 years ago

sivkovic commented 5 years ago

We should fix these errors to be sure that our pipeline is portable

https://github.com/mskcc/roslin-cwl/blob/d6b0433ca6211bfc59acb2071b956efe99cfdeaf/tools/conpair/0.3.3/conpair-contaminations.cwl#L2

/tmp/550cd425-076c-4d56-952a-535aab4320b7/roslin-cwl/modules/sample/resolve-pdx/cwl-commandlinetools/msisensor_0.2/msisensor-0.2.cwl:cwlVersion: cwl:v1.0
/tmp/550cd425-076c-4d56-952a-535aab4320b7/roslin-cwl/modules/sample/resolve-pdx/cwl-commandlinetools/msisensor_0.6/msisensor-0.6.cwl:cwlVersion: cwl:v1.0
/tmp/550cd425-076c-4d56-952a-535aab4320b7/roslin-cwl/modules/sample/resolve-pdx/align_sample/command_line_tools/msisensor_0.2/msisensor-0.2.cwl:cwlVersion: cwl:v1.0
/tmp/550cd425-076c-4d56-952a-535aab4320b7/roslin-cwl/modules/sample/resolve-pdx/align_sample/command_line_tools/msisensor_0.6/msisensor-0.6.cwl:cwlVersion: cwl:v1.0
/tmp/550cd425-076c-4d56-952a-535aab4320b7/roslin-cwl/modules/sample/resolve-pdx/align_sample/align_sort_bam/command_line_tools/msisensor_0.2/msisensor-0.2.cwl:cwlVersion: cwl:v1.0
/tmp/550cd425-076c-4d56-952a-535aab4320b7/roslin-cwl/modules/sample/resolve-pdx/align_sample/align_sort_bam/command_line_tools/msisensor_0.6/msisensor-0.6.cwl:cwlVersion: cwl:v1.0
/tmp/550cd425-076c-4d56-952a-535aab4320b7/roslin-cwl/tools/conpair/0.3.3/conpair-concordances.cwl:cwlVersion: cwl:v1.0
/tmp/550cd425-076c-4d56-952a-535aab4320b7/roslin-cwl/tools/conpair/0.3.3/conpair-master.cwl:cwlVersion: cwl:v1.0
/tmp/550cd425-076c-4d56-952a-535aab4320b7/roslin-cwl/tools/conpair/0.3.3/conpair-contaminations.cwl:cwlVersion: cwl:v1.0