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mskcc / vcf2maf

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
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Does vcf2maf work for Mac OS? #176

Open lemuelsoh opened 6 years ago

lemuelsoh commented 6 years ago

The following gist: https://gist.github.com/ckandoth/f265ea7c59a880e28b1e533a6e935697 seems to only work for linux systems. Is there an equivalent one for Mac OS? Also, does vcf2maf only work for VEP v86, but not newer versions of VEP?

ShixiangWang commented 6 years ago

Maybe you can use docker to create a Linux System to run all related commands or software. The vcf2maf can work for the latest VEP version. I use VEP 91 and it works fine.