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mskcc / vcf2maf

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
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Bio::EnsEMBL::Registry package #315

Open jingydz opened 2 years ago

jingydz commented 2 years ago

Hi, I was wondering how can I deal with this problem? I can't install the Bio::EnsEMBL::Registry package. https://github.com/Ensembl/ensembl-vep/blob/316682594c11101535882b29983e07cd2cb53420/modules/Bio/EnsEMBL/VEP/BaseVEP.pm#L56

./vep Can't locate Bio/EnsEMBL/Registry.pm in @INC (@INC contains: /xxx/ensembl-vep-release-106/modules /xxx/ensembl-vep-release-106 /xxx/software/mirdeep2-0.1.3/lib/perl5 /home/dell/vep/ensembl-vep /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib64/perl5 /usr/share/perl5 .) at /xxx/ensembl-vep-release-106/modules/Bio/EnsEMBL/VEP/BaseVEP.pm line 58. BEGIN failed--compilation aborted at /xxx/ensembl-vep-release-106/modules/Bio/EnsEMBL/VEP/BaseVEP.pm line 58. Compilation failed in require at (eval 7) line 3. ...propagated at /usr/share/perl5/base.pm line 94. BEGIN failed--compilation aborted at /xxx/ensembl-vep-release-106/modules/Bio/EnsEMBL/VEP/BaseRunner.pm line 56. Compilation failed in require at (eval 6) line 3. ...propagated at /usr/share/perl5/base.pm line 94. BEGIN failed--compilation aborted at /xxx/ensembl-vep-release-106/modules/Bio/EnsEMBL/VEP/Runner.pm line 71. Compilation failed in require at ./vep line 20. BEGIN failed--compilation aborted at ./vep line 20.