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mskcc / vcf2maf

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
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Option --retain-fmt doesn't work #337

Open YussAb opened 1 year ago

YussAb commented 1 year ago

I found this flag while typing vcf2maf --help:

-retain-fmt Comma-delimited names of FORMAT fields to retain as extra columns in MAF []

Unfortunately it doesn't work and it get an error that make very difficult debug the error.

Screenshot from 2023-02-09 11-43-21