mskilab-org / JaBbA

MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.
MIT License
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Xt debug #3

Closed xtYao closed 6 years ago

xtYao commented 6 years ago

Two situations causing jabba.digest to fail: -- (line 2611) NA values in jab$segstats$eslack.in or jab$segstats$eslack.out I'm adding na.rm to the any() function

-- (line 2643) When no loose end is present, the expression fails because we need to create "segstats" variable first