search

mskilab-org / JaBbA

MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.
MIT License
56 stars 26 forks source link

filter.loose failing when flanking node contains just 2 coverage bins #52

Closed ShaiberAlon closed 3 years ago

ShaiberAlon commented 3 years ago

if a node flanking a loose end contains just 1 or 2 bins then don't get rid of the bins when determining the quality of the loose end

codecov[bot] commented 3 years ago

Codecov Report

Merging #52 (9a4c83d) into master (73206cf) will increase coverage by 0.00%. The diff coverage is 100.00%.

Impacted file tree graph

@@           Coverage Diff           @@
##           master      #52   +/-   ##
=======================================
  Coverage   76.20%   76.20%           
=======================================
  Files           4        4           
  Lines        4488     4489    +1     
=======================================
+ Hits         3420     3421    +1     
  Misses       1068     1068
Impacted Files Coverage Δ
R/JaBbA.R 76.30% <100.00%> (+<0.01%) :arrow_up:

Continue to review full report at Codecov.

Legend - Click here to learn more Δ = absolute <relative> (impact), ø = not affected, ? = missing data Powered by Codecov. Last update 73206cf...9a4c83d. Read the comment docs.