Expected output of toy example

mskilab-org / JaBbA

MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.

MIT License

56 stars 25 forks source link

Expected output of toy example #79

Closed williamphu closed 11 months ago

williamphu commented 1 year ago

Hi there,

I was wondering if there are expected outputs from the toy example $ jba ${JABBA_PATH}/junctions.vcf ${JABBA_PATH}/coverage.txt (maybe I just can't find them!), or if they could be included, so that we can verify our installation andthat our output matches once we run it ourselves.

Thanks, William

shihabdider commented 11 months ago

The jab.* files in the inst/extdata directory are the output files (e.g jab.cn.gs.rds). You can also run the tests in the tests directory (which use the same input files you mentioned) to verify your installation.