search

mskilab-org / dryclean

Irons out wrinkles in noisy coverage data using robust PCA
12 stars 14 forks source link

start_wash_cycle function #34

Closed ZWael closed 1 month ago

ZWael commented 1 month ago

Hello, First, I would like to congratulate the mskilab team on the outstanding scientific article on plasma tumor burden monitoring I was trying the MRD tutorial in fact the run-dryclean.r script is using the start_wash_cycle function that wasn't loaded within library, I looked for start_wash_cycle in the dryclean github repo but wasn't able to find it

Any help would be appreciated

jrafailov commented 1 month ago

Hi,

Thanks for the inquiry and our apologies for the delayed response!

We recently updated dryclean to follow an R6/object-oriented paradigm and the master branch reflects these changes. We suggest adapting your code to follow the new framework, but if that proves difficult, please feel free to use the zc_dev branch as the internal algorithm has remained the same.

The zc_dev branch will have the start_wash_cycle function immediately accessible when loading the library.