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mskilab-org / fragCounter

GC and mappability corrected fragment coverage for paired end whole genome sequencing
MIT License
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minmapq is ignored #2

Open tlesluyes opened 4 years ago

tlesluyes commented 4 years ago

Hi. It seems like the minmapq argument is currently useless because it is ignored in the PrepareCov function where min.mapq = 1 is hardcoded.

mskilab commented 4 years ago

Thanks - good catch, will correct this

On Mon, Jan 6, 2020 at 9:44 AM tlesluyes notifications@github.com wrote:

Hi. It seems like the minmapq argument is currently useless because it is ignored in the PrepareCov function where min.mapq = 1 is hardcoded.

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