GC and mappability corrected read depth data for hg38

mskilab-org / fragCounter

GC and mappability corrected fragment coverage for paired end whole genome sequencing

MIT License

7 stars 12 forks source link

GC and mappability corrected read depth data for hg38 #28

Open Bio-LiHe opened 10 months ago

Bio-LiHe commented 10 months ago

Hi, Could you please inform me how the gc1000.rds and map1000.rds files are generated, or where to download the hg38 GC content and Mappability files for 1 kb whole-genome sequencing (hg38)?

tanubrata commented 9 months ago

Hi, We recently merged PR #29 with the updated files for both 200bp and 1kb bins for hg38. You should be able to locate it under inst/extdata folder. Thanks.