Open kcygan opened 4 years ago
Just a suggestion. For people who mapped reads to hg19 (i.e. "chr" included in seqnames), it would be sufficient to add one line: cov = gr.sub(cov)
cov = gr.sub(cov)
right after line 627 https://github.com/mskilab/fragCounter/blob/575af9926e5177a39b45a31ad37048953a680ca4/R/fragCounter.R#L627
Just a suggestion. For people who mapped reads to hg19 (i.e. "chr" included in seqnames), it would be sufficient to add one line:
cov = gr.sub(cov)right after line 627 https://github.com/mskilab/fragCounter/blob/575af9926e5177a39b45a31ad37048953a680ca4/R/fragCounter.R#L627