Closed kyleabeauchamp closed 10 years ago
In [29]: p1.empty_traj() --------------------------------------------------------------------------- TypeError Traceback (most recent call last) <ipython-input-29-cd370c33514b> in <module>() ----> 1 p1.empty_traj() /home/kyleb/opt/lib/python2.7/site-packages/msmbuilder-2.8-py2.7-linux-x86_64.egg/msmbuilder/project/project.pyc in empty_traj(self) 430 def empty_traj(self): 431 traj = self.load_conf() --> 432 traj.xyz = None 433 return traj 434 /home/kyleb/opt/lib/python2.7/site-packages/mdtraj-0.5.1-py2.7-linux-x86_64.egg/mdtraj/trajectory.pyc in xyz(self, value) 704 705 value = ensure_type(value, np.float32, 3, 'xyz', shape=shape, --> 706 warn_on_cast=False, add_newaxis_on_deficient_ndim=True) 707 self._xyz = value 708 self._rmsd_traces = None /home/kyleb/opt/lib/python2.7/site-packages/mdtraj-0.5.1-py2.7-linux-x86_64.egg/mdtraj/utils/arrays.pyc in ensure_type(val, dtype, ndim, name, length, can_be_none, shape, warn_on_cast, add_newaxis_on_deficient_ndim) 100 else: 101 raise TypeError(("%s must be numpy array. " --> 102 " You supplied type %s" % (name, type(val)))) 103 104 if warn_on_cast and val.dtype != dtype: TypeError: xyz must be numpy array. You supplied type <type 'NoneType'>
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