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msmbuilder / msmbuilder-legacy

Legacy release of MSMBuilder
http://msmbuilder.org
GNU General Public License v2.0
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SHC Macrostate Clustering Methods and MSMBuilder #308

Closed s-gordon closed 10 years ago

s-gordon commented 10 years ago

Hi all.

After trying out various macrostate clustering protocols (PCCA, PCCA+, BACE) I was curious to see how other clustering methods perform with decomposing my ~1000 state MSM describing a ligand-association event. The application of Super High-Level Clustering (SHC) in a similar setting (http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002054) in the content of MSMB caught my interest.

Is there any inbuilt functionality for using the SHC algorithm in MSMB at present?

kyleabeauchamp commented 10 years ago

I believe you'll have to contact the authors for SHC.

rmcgibbo commented 10 years ago

To answer your question more directly, there is no inbuilt functionality for using the SHC algorithm in MSMB at present.