In ConvertDataToHDF, we should have mdtraj load everything it can. One person was tripped up at the workshop trying to load in dcd trajectories, and I was caught off guard by this after the switch to mdtraj.
Furthermore, I think the workshop guy originally had pdb trajectories and had to convert to dcd so msmbuilder could load them, which shouldn't be necessary now that we're using mdtraj
In
ConvertDataToHDF
, we should have mdtraj load everything it can. One person was tripped up at the workshop trying to load in dcd trajectories, and I was caught off guard by this after the switch to mdtraj.Furthermore, I think the workshop guy originally had pdb trajectories and had to convert to dcd so msmbuilder could load them, which shouldn't be necessary now that we're using mdtraj