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msmbuilder / msmbuilder-legacy

Legacy release of MSMBuilder
http://msmbuilder.org
GNU General Public License v2.0
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msmb: error: unrecognized arguments (AtomPairsFeaturizer) #458

Closed braintumor closed 9 years ago

braintumor commented 9 years ago

I am following the alanine dipeptide tutorial. At third step, I entered this

msmb AtomPairsFeaturizer --transformed pair_features --pairindices AtomIndices.txt --top ala2.pdb --trjs .dcd_

and getting this:

msmb: error: unrecognized arguments: trajectory_1.dcd trajectory_2.dcd trajectory_3.dcd trajectory_4.dcd trajectory_5.dcd trajectory_6.dcd trajectory_7.dcd trajectory_8.dcd trajectory_9.dcd

Only thing I am doing differently is that I am in the same folder as the .dcd files, which I thought, wouldn't make a difference. Am I missing something?

braintumor commented 9 years ago

Sorry, made a noob mistake. In --trjs .dcd you have to say : --trjs ".dcd"