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msmbuilder / msmexplorer

Data visualizations for biomolecular dynamics
http://msmbuilder.org/msmexplorer/
MIT License
17 stars 17 forks source link

TODO #1

Open cxhernandez opened 8 years ago

cxhernandez commented 8 years ago

re: https://github.com/msmbuilder/msmbuilder/issues/697

cxhernandez commented 8 years ago

cc @mpharrigan @msultan for more plot ideas

msultan commented 8 years ago

errorbars, movie makers

cxhernandez commented 8 years ago

errorbars

I imagine this might be done with a kwarg for relevant plots? Let me know if you had something in mind

movie makers

Could you elaborate? Am I going to be making a movie making API?

This refers to animating plots.

cxhernandez commented 8 years ago

cc-ing @dr-nate, @brookehus, @evanfeinberg, @nlatorra, @eigenstate, @jchodera, @steven-albanese and @maxentile, in case you have plot ideas or VMD/PyMOL scripts to contribute 😄

cxhernandez commented 7 years ago

bump @msultan

cxhernandez commented 7 years ago

bump @brookehus (once you've submitted your paper 😄)

jeiros commented 7 years ago

Have you considered UCSF Chimera for visualization? I know it has a Python API although I'm not too familiar with it.

Interesting repo btw! 👍

cxhernandez commented 7 years ago

Have you considered UCSF Chimera for visualization? I know it has a Python API although I'm not too familiar with it.

I have, but I haven't used the Python API. Generally, I'd like to contain all dependencies within conda, and with pychimera it seems like you still need a local installation of Chimera which makes it kind of a deal-breaker 😕

I think nglview is going to be the default for the MSMExplorer, but we'll offer automated scripting tools for VMD, PyMOL, and Chimera, as people contribute them (and as soon as we think of a good API for this).