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msmbuilder / msmexplorer

Data visualizations for biomolecular dynamics
http://msmbuilder.org/msmexplorer/
MIT License
17 stars 17 forks source link

plot_free_energy woes with ergodic trimming #82

Open cxhernandez opened 7 years ago

cxhernandez commented 7 years ago

plot_free_energy should take the MSM object rather than pi. This way ergodic trimming issues can be handled under the hood.