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msmdev / msmtools

Tools for estimating and analyzing Markov state models
GNU Lesser General Public License v3.0
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Memory issue #14

Closed Marius1311 closed 4 years ago

Marius1311 commented 4 years ago

This adresses a memory issue we had with very large sample sizes. Essentially, we should never create a matrix of size n_samples x n_samples. Previously, we did this in commands such as np.diag(1. / np.sqrt(eta), which raises the memory error.

Marius1311 commented 4 years ago

@giovp, this should hopefully fix your memory error!

Marius1311 commented 4 years ago

okay, should be done!

Marius1311 commented 4 years ago

thanks!