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msmdev / msmtools

Tools for estimating and analyzing Markov state models
GNU Lesser General Public License v3.0
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Fix the coarse-graining for sparse matrices #17

Open Marius1311 opened 4 years ago

Marius1311 commented 4 years ago

Currently, there is a densification here:

https://github.com/msmdev/msmtools/blob/d662da6da54b8c792f5b3e30301fcd102c3a02ff/msmtools/analysis/dense/gpcca.py#L829

Needs to be fixed, potentially once we have tests so we can make sure nothing changes.