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msneddon / nfsim

A general-purpose, stochastic, biochemical reaction simulator for large reaction networks
MIT License
17 stars 18 forks source link

NFsim not making species file #22

Closed mcencer closed 5 years ago

mcencer commented 5 years ago

I am working on a depolymerization model, and when the NFsim run happens it aborts because it can't find a species file, because it isn't making a species file. I am using the same simulation settings that have worked for other models.

mcencer commented 5 years ago

I discovered that the issue was actually having too many molecules for the simulation, as I had already set the gml very high, instead of giving an error message, it simply didn't make any output or run the simulation. With a smaller number of molecules it runs fine.