msneddon / nfsim

A general-purpose, stochastic, biochemical reaction simulator for large reaction networks
MIT License
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"Safe" mode for NFsim UTL parameter #7

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago
Currently, NFsim chooses a UTL value by default, which may be too small for 
polymerizing systems. In these cases, the user has to manually increase the 
value of UTL until the simulation runs without error. This makes people 
nervous, however, since they generally don't understand what the UTL is. It 
would be nice, therefore, to provide a "safe" mode that effectively sets UTL to 
Infinity and ensures that the results are always correct, even if the 
simulation efficiency suffers. 

Original issue reported on code.google.com by lh64@cornell.edu on 5 Jun 2013 at 3:56

GoogleCodeExporter commented 9 years ago
[deleted comment]
GoogleCodeExporter commented 9 years ago

Original comment by lh64@cornell.edu on 5 Jun 2013 at 8:42

GoogleCodeExporter commented 9 years ago
Moved to: Issue bionetgen:106

Original comment by lh64@cornell.edu on 5 Jun 2013 at 8:42