mtandon09 / CCBR_GATK4_Exome_Seq_Pipeline

An easy-to-use, flexible variant calling pipeline for use on the Biowulf cluster at NIH

https://mtandon09.github.io/CCBR_GATK4_Exome_Seq_Pipeline/

MIT License

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Converting CNV and preprocessing rules #14

Closed skchronicles closed 3 years ago

skchronicles commented 3 years ago

Changelog

Updating rules cnk.smk and trim_map_preprocess.smk to use WES base docker image. Also fixing a bug in Snakefile that was preventing any CNV-related rules from running.

Updated:

workflow/Snakefile
- workflow/rules/trim_map_preprocess.smk
- workflow/rules/cnv.smk