mtandon09 / CCBR_GATK4_Exome_Seq_Pipeline

An easy-to-use, flexible variant calling pipeline for use on the Biowulf cluster at NIH

https://mtandon09.github.io/CCBR_GATK4_Exome_Seq_Pipeline/

MIT License

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Converting remaining SNP calling, QC, and FFPE rules #16

Closed skchronicles closed 3 years ago

skchronicles commented 3 years ago

Changelog

Updating TN somatic SNP calling rules
Converting snpEff and somalier rules
Converting FFPE SOB Detection rules
Converting common somatic SNP calling rules
Converting tumor only somatic SNP calling rules