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mtandon09
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CCBR_GATK4_Exome_Seq_Pipeline
An easy-to-use, flexible variant calling pipeline for use on the Biowulf cluster at NIH
https://mtandon09.github.io/CCBR_GATK4_Exome_Seq_Pipeline/
MIT License
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Updates and bug fixes
#18
Closed
skchronicles
closed
2 years ago
skchronicles
commented
2 years ago
Changelog
Updating job names of each rule to remove lingering
pl:
prefix
Adding trimmomatic wrapper using java11 (jdk 1.11) to WES base image for backward compatibility with Biowulf
Fix: creating uninitialized output directory in rule fc_lane
Updating gatk MergeVcfs usage due to incompatibility with GATK/4.2.X
Adding bc for math operations to WES base image
Adding mutect image to TN rules
Adding path to snpEff bundle to ensure bind path of singularity is mounted
Adding gawk to WES base image to ensure backwards compatibility with Biowulf
Adding missing pandoc/2.5 dependency for Rmarkdown to WES base image
Changelog
pl:prefix