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mtandon09 / CCBR_GATK4_Exome_Seq_Pipeline

An easy-to-use, flexible variant calling pipeline for use on the Biowulf cluster at NIH
https://mtandon09.github.io/CCBR_GATK4_Exome_Seq_Pipeline/
MIT License
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Unified freec fix #35

Closed skchronicles closed 2 years ago

skchronicles commented 2 years ago

Freec BED file fix

This PR fixes a formating issue related to the input targets BED file to FREEC. FREEC will fail if duplicated regions exist in the targets file. A new script was added to ensure this does not happen.