mtandon09 / CCBR_GATK4_Exome_Seq_Pipeline

An easy-to-use, flexible variant calling pipeline for use on the Biowulf cluster at NIH

MIT License

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Closed skchronicles closed 3 years ago

skchronicles commented 3 years ago

Changelog

Updating repo hierarchy to follow snakemake's recommended structure
Breaking up config into modular components for new reference genomes
Adding new main entry point to pipeline with new options: exome-seek
Added github actions CI workflow to dry run and lint the pipeline using public snakemake docker image
- Trigger: pushed to master, main, or unified branches