Closed eul2021 closed 1 year ago
Hi eul2021,
irf
and Cenote-Taker 2
in linux? you should just be able to do this command:./irf307.linux.exe
Let me know if you have any more trouble and what you find out about length limits on ITRs.
Mike
Thank you, Mike! I managed to run the irf and now my ITR contigs are detected correctly. Thank you for your help.
OK, sounds good. If there was something sub-optimal about how irf
was being implemented in the tool, please let me know.
Mike
Hi Mike,
I was wondering if there's any limitation on contig length to detect ITRs? For instance, in your test contig example you're showing a relatively short ITR. What if my ITR is > 100bp? Any parameters to irf input I should adjust?
If I want to debug irf module by itself - how would you recommend to run it? I tried just invoking the executable, but it doesn't work. It seems to work from within cenote, though, as no error message in the output is found.
Thank you very much for your help.