mtisza1
commented
2 years ago Hi jamesck2,
Sorry for the delayed reply, I was on a github break. I am now able to help with your issue. Based on what you said, the installation must have not worked correctly. If you are still interested in troubleshooting this issue, please run Cenote-Taker 2 on the DNA test contigs, then send the log and the zipped output to my email. If you have a log file of the installation, that would also be very helpful.
conda activate cenote-taker2_env
cd Cenote-Taker2
python run_cenote-taker2.py -c testcontigs_DNA_ct2.fasta -r test_DNA_ct -p True -m 32 -t 32 2>&1 | tee test_output.log
Hello, I've tried both importaning known viral contigs for annotation only, and the original metagenome from which they came for virus prediction and annotation, and neither time are there any viral annotations in the results. Not one viral hallmark gene is being predicted on any contig, but I know that other tools that I've used have found several. Do you know what might be causing this? Thanks in advance.