Closed cn6659 closed 1 year ago
Hi,
Thanks for bringing up the issue, and I'm sorry for the delayed reply. I was working to update Cenote-Taker 2
to v2.1.5. is your run title (-r) "ERR1301564_a1_ct4075"? If so, it is too long and it is causing problems with some tools in the script.
Run titles "Must be less than 18 characters, using ONLY letters, numbers and underscores (_)"
In v2.1.5, I've made a checkpoint to ensure all run titles are appropriately formatted. You can update your version with the instructions on the README.
If you continue to have issues, please send a log file of the run that gave you problems.
Best,
Mike
Hi,
In the CONTIG_SUMMARY.tsv, ERR1301564_a1_ct40759 exists as below.
ERR1301564_k79_72066 ERR1301564_a1_ct40759 Unknown DTR 1611 Prodigal 0 none BLASTN not conducted
But, in the DTR_contigs_with_viral_domain, ERR1301564_a1_ct40759 has only fna file.
**ls ERR1301564_a1_ct4075*** ERR1301564_a1_ct40759.fna
Success Case has .rotate.fasta, .tax_guide.blastx.out as well as .fna.
**ls ERR1301564_a1_ct38931*** ERR1301564_a1_ct38931.AA.fasta ERR1301564_a1_ct38931.rotate.fasta ERR1301564_a1_ct38931.trans.fasta ERR1301564_a1_ct38931.fna ERR1301564_a1_ct38931.tax_guide.blastx.out
Why the contig in the CONTIG_SUMMARY.tsv has no .rotate.fasta, .tax_guide.blastx.out?