Closed geboro closed 2 years ago
Hi geboro,
Thanks for opening an issue. The contig summary file name is actually based on your run title, with _CONTIG_SUMMARY.tsv
as a suffix. So if you did a run with argument -r my_contigs1_ct
, the contig summary table would be: my_contigs1_ct_CONTIG_SUMMARY.tsv
. I updated the description in the README, and I hope it helps.
I'm going to close this issue, but feel free to reach out if you have any other issues.
Best,
Mike
In the script provided to generate the files required for vcontACT2 in the README.md file, the definition of the env variable that contains the input file:
SUMMARY="cenote_out_CONTIG_SUMMARY.tsv"
should actually beSUMMARY="cenote_CONTIG_SUMMARY.tsv"
....