LTLA
commented
6 years ago The DropletUtils package just went into BioC-devel, which might be a more stable home for some of the code in TENxGenomics. (I'm thinking of only the code required to convert it to a HDF5Matrix, to avoid having to drag in the implementation of the TENxMatrix and TENxSummarizedExperiment classes; those seem like a big maintenance overhead for just one resource.)
mtmorgan
if not maybe put a pointer at top of README
Installing github package(s) ‘mtmorgan/TENxGenomics’ Downloading GitHub repo mtmorgan/TENxGenomics@master from URL https://api.github.com/repos/mtmorgan/TENxGenomics/zipball/master Installing TENxGenomics '/Library/Frameworks/R.framework/Resources/bin/R' --no-site-file --no-environ \ --no-save --no-restore --quiet CMD INSTALL \ '/private/var/folders/5_/14ld0y7s0vbg_z0g2c9l8v300000gr/T/RtmpZ1fGvz/devtools118ef71231fe6/mtmorgan-TENxGenomics-431dff7' \ --library='/Library/Frameworks/R.framework/Versions/3.5/Resources/library' \ --install-tests
Matrix products: default BLAS: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRblas.0.dylib LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib
locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages: [1] stats graphics grDevices utils datasets methods base
other attached packages: [1] BiocInstaller_1.29.3 rmarkdown_1.8
loaded via a namespace (and not attached): [1] Rcpp_0.12.14 digest_0.6.13 withr_2.1.1 rprojroot_1.3-2 [5] R6_2.2.2 backports_1.1.2 git2r_0.21.0 magrittr_1.5
[9] evaluate_0.10.1 httr_1.3.1 stringi_1.1.6 curl_3.1
[13] devtools_1.13.4 tools_3.5.0 stringr_1.2.0 compiler_3.5.0 [17] memoise_1.1.0 htmltools_0.3.6 knitr_1.18