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mtsch / Ripserer.jl

Flexible and efficient persistent homology computation.
https://mtsch.github.io/Ripserer.jl/dev/
MIT License
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Improve representatives docs #107

Closed mtsch closed 4 years ago

codecov[bot] commented 4 years ago

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Merging #107 into master will not change coverage. The diff coverage is n/a.

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  Coverage   95.81%   95.81%           
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  Files          18       18           
  Lines        1146     1146           
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  Hits         1098     1098           
  Misses         48       48

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github-actions[bot] commented 4 years ago
Benchmark result # Judge result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmarks: - Target: 1 Oct 2020 - 09:23 - Baseline: 1 Oct 2020 - 09:27 * Package commits: - Target: 5c9a0e - Baseline: dfe77a * Julia commits: - Target: 539f3c - Baseline: 539f3c * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |----------------------------------------------------|---------------|--------------| | `["cubical", "bonsai64.dipha"]` | 1.12 (5%) :x: | 1.00 (1%) | | `["cubical", "lena1024.dipha"]` | 1.11 (5%) :x: | 1.00 (1%) | | `["rips", "dense", "dragon2000.pts"]` | 1.15 (5%) :x: | 1.00 (1%) | | `["rips", "dense", "fract-r.dist"]` | 1.05 (5%) :x: | 1.00 (1%) | | `["rips", "sparse", "alpha_3_sphere_3000.spdist"]` | 1.10 (5%) :x: | 1.00 (1%) | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 1.11 (5%) :x: | 1.00 (1%) | | `["rips", "sparse", "fract-r.dist"]` | 1.07 (5%) :x: | 1.00 (1%) | | `["rips", "sparse", "o3_1024.pts"]` | 1.12 (5%) :x: | 1.00 (1%) | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ### Target ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1025-azure #25~18.04.1-Ubuntu SMP Sat Sep 5 15:28:57 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 30523 s 0 s 2324 s 11618 s 0 s #2 2095 MHz 7405 s 0 s 1669 s 35996 s 0 s Memory: 6.791393280029297 GB (2565.84765625 MB free) Uptime: 463.0 sec Load Avg: 1.001953125 0.85791015625 0.451171875 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512) ``` ### Baseline ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1025-azure #25~18.04.1-Ubuntu SMP Sat Sep 5 15:28:57 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 37762 s 0 s 2508 s 28842 s 0 s #2 2095 MHz 24274 s 0 s 2321 s 43174 s 0 s Memory: 6.791393280029297 GB (2657.515625 MB free) Uptime: 711.0 sec Load Avg: 1.0 0.953125 0.59423828125 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512) ``` --- # Target result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 1 Oct 2020 - 9:23 * Package commit: 5c9a0e * Julia commit: 539f3c * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["cubical", "bonsai128.dipha"]` | 30.208 s (5%) | 714.126 ms | 4.13 GiB (1%) | 53518928 | | `["cubical", "bonsai64.dipha"]` | 2.947 s (5%) | 52.251 ms | 582.26 MiB (1%) | 7104718 | | `["cubical", "lena1024.dipha"]` | 2.483 s (5%) | 231.396 ms | 952.84 MiB (1%) | 14470858 | | `["cubical", "lena2048.dipha"]` | 8.667 s (5%) | 542.445 ms | 2.68 GiB (1%) | 33883082 | | `["homology", "bonsai64.dipha"]` | 8.543 s (5%) | 54.385 ms | 911.56 MiB (1%) | 11462496 | | `["homology", "klein200.pts"]` | 2.567 s (5%) | 13.728 ms | 110.58 MiB (1%) | 2060659 | | `["homology", "lena1024.dipha"]` | 7.193 s (5%) | 245.485 ms | 1.10 GiB (1%) | 16807642 | | `["homology", "sphere100.pts"]` | 1.594 s (5%) | 12.422 ms | 119.16 MiB (1%) | 1589845 | | `["rips", "dense", "dragon2000.pts"]` | 3.137 s (5%) | 35.101 ms | 301.15 MiB (1%) | 227714 | | `["rips", "dense", "fract-r.dist"]` | 20.649 s (5%) | 311.363 ms | 1.79 GiB (1%) | 186542 | | `["rips", "dense", "o3_1024.pts"]` | 6.096 s (5%) | 64.093 ms | 449.00 MiB (1%) | 2376905 | | `["rips", "sparse", "alpha_3_sphere_3000.spdist"]` | 2.670 s (5%) | 12.508 ms | 169.07 MiB (1%) | 2379165 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 7.428 s (5%) | 33.489 ms | 546.61 MiB (1%) | 3185266 | | `["rips", "sparse", "alpha_5_sphere_1000.spdist"]` | 49.406 s (5%) | 450.961 ms | 3.40 GiB (1%) | 3016110 | | `["rips", "sparse", "dragon2000.pts"]` | 3.246 s (5%) | 36.297 ms | 331.51 MiB (1%) | 223713 | | `["rips", "sparse", "fract-r.dist"]` | 22.267 s (5%) | 313.648 ms | 1.80 GiB (1%) | 185517 | | `["rips", "sparse", "o3_1024.pts"]` | 2.961 s (5%) | 38.654 ms | 341.76 MiB (1%) | 166323 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1025-azure #25~18.04.1-Ubuntu SMP Sat Sep 5 15:28:57 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 30523 s 0 s 2324 s 11618 s 0 s #2 2095 MHz 7405 s 0 s 1669 s 35996 s 0 s Memory: 6.791393280029297 GB (2565.84765625 MB free) Uptime: 463.0 sec Load Avg: 1.001953125 0.85791015625 0.451171875 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512) ``` --- # Baseline result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 1 Oct 2020 - 9:27 * Package commit: dfe77a * Julia commit: 539f3c * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["cubical", "bonsai128.dipha"]` | 30.194 s (5%) | 692.397 ms | 4.13 GiB (1%) | 53518929 | | `["cubical", "bonsai64.dipha"]` | 2.636 s (5%) | 48.866 ms | 582.26 MiB (1%) | 7104718 | | `["cubical", "lena1024.dipha"]` | 2.245 s (5%) | 211.556 ms | 952.84 MiB (1%) | 14470858 | | `["cubical", "lena2048.dipha"]` | 8.389 s (5%) | 517.732 ms | 2.68 GiB (1%) | 33883082 | | `["homology", "bonsai64.dipha"]` | 8.947 s (5%) | 216.959 ms | 911.56 MiB (1%) | 11462496 | | `["homology", "klein200.pts"]` | 2.607 s (5%) | 14.540 ms | 110.58 MiB (1%) | 2060659 | | `["homology", "lena1024.dipha"]` | 7.432 s (5%) | 249.969 ms | 1.10 GiB (1%) | 16807642 | | `["homology", "sphere100.pts"]` | 1.612 s (5%) | 13.048 ms | 119.16 MiB (1%) | 1589845 | | `["rips", "dense", "dragon2000.pts"]` | 2.719 s (5%) | 28.809 ms | 301.15 MiB (1%) | 227714 | | `["rips", "dense", "fract-r.dist"]` | 19.643 s (5%) | 289.884 ms | 1.79 GiB (1%) | 186542 | | `["rips", "dense", "o3_1024.pts"]` | 6.046 s (5%) | 62.075 ms | 449.00 MiB (1%) | 2376905 | | `["rips", "sparse", "alpha_3_sphere_3000.spdist"]` | 2.424 s (5%) | 11.989 ms | 169.07 MiB (1%) | 2379165 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 6.671 s (5%) | 32.586 ms | 546.61 MiB (1%) | 3185266 | | `["rips", "sparse", "alpha_5_sphere_1000.spdist"]` | 47.305 s (5%) | 426.196 ms | 3.40 GiB (1%) | 3016109 | | `["rips", "sparse", "dragon2000.pts"]` | 3.155 s (5%) | 31.957 ms | 331.51 MiB (1%) | 223713 | | `["rips", "sparse", "fract-r.dist"]` | 20.884 s (5%) | 286.686 ms | 1.80 GiB (1%) | 185517 | | `["rips", "sparse", "o3_1024.pts"]` | 2.645 s (5%) | 33.981 ms | 341.76 MiB (1%) | 166323 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1025-azure #25~18.04.1-Ubuntu SMP Sat Sep 5 15:28:57 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 37762 s 0 s 2508 s 28842 s 0 s #2 2095 MHz 24274 s 0 s 2321 s 43174 s 0 s Memory: 6.791393280029297 GB (2657.515625 MB free) Uptime: 711.0 sec Load Avg: 1.0 0.953125 0.59423828125 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512) ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 2 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian CPU(s): 2 On-line CPU(s) list: 0,1 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 NUMA node(s): 1 Vendor ID: GenuineIntel CPU family: 6 Model: 85 Model name: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz Stepping: 4 CPU MHz: 2095.196 BogoMIPS: 4190.39 Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 32K L1i cache: 32K L2 cache: 1024K L3 cache: 36608K NUMA node0 CPU(s): 0,1 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm mpx avx512f avx512dq rdseed adx smap clflushopt avx512cd avx512bw avx512vl xsaveopt xsavec xsaves md_clear | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz | | Vendor | :Intel | | Architecture | :Skylake | | Model | Family: 0x06, Model: 0x55, Stepping: 0x04, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 1024, 36608) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 46 bits physical | | SIMD | 512 bit = 64 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |
github-actions[bot] commented 4 years ago
Benchmark result # Judge result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmarks: - Target: 2 Oct 2020 - 00:33 - Baseline: 2 Oct 2020 - 00:37 * Package commits: - Target: 7557f9 - Baseline: dfe77a * Julia commits: - Target: 539f3c - Baseline: 539f3c * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |----------------------------------------------------|------------------------------|--------------| | `["rips", "dense", "fract-r.dist"]` | 0.93 (5%) :white_check_mark: | 1.00 (1%) | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ### Target ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1025-azure #25~18.04.1-Ubuntu SMP Sat Sep 5 15:28:57 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 27394 s 0 s 2013 s 12089 s 0 s #2 2294 MHz 6814 s 0 s 1752 s 32809 s 0 s Memory: 6.791393280029297 GB (2738.9140625 MB free) Uptime: 433.0 sec Load Avg: 1.00146484375 0.91650390625 0.4970703125 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, broadwell) ``` ### Baseline ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1025-azure #25~18.04.1-Ubuntu SMP Sat Sep 5 15:28:57 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 27984 s 0 s 2084 s 34066 s 0 s #2 2294 MHz 28279 s 0 s 2493 s 33283 s 0 s Memory: 6.791393280029297 GB (2743.44140625 MB free) Uptime: 660.0 sec Load Avg: 1.10546875 1.0146484375 0.6357421875 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, broadwell) ``` --- # Target result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 2 Oct 2020 - 0:33 * Package commit: 7557f9 * Julia commit: 539f3c * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["cubical", "bonsai128.dipha"]` | 25.425 s (5%) | 647.665 ms | 4.13 GiB (1%) | 53518977 | | `["cubical", "bonsai64.dipha"]` | 2.330 s (5%) | 49.856 ms | 582.26 MiB (1%) | 7104718 | | `["cubical", "lena1024.dipha"]` | 2.093 s (5%) | 208.956 ms | 952.84 MiB (1%) | 14470858 | | `["cubical", "lena2048.dipha"]` | 7.605 s (5%) | 484.577 ms | 2.68 GiB (1%) | 33883104 | | `["homology", "bonsai64.dipha"]` | 7.979 s (5%) | 202.069 ms | 911.57 MiB (1%) | 11462668 | | `["homology", "klein200.pts"]` | 2.386 s (5%) | 13.668 ms | 110.58 MiB (1%) | 2060666 | | `["homology", "lena1024.dipha"]` | 6.737 s (5%) | 228.983 ms | 1.11 GiB (1%) | 16807709 | | `["homology", "sphere100.pts"]` | 1.531 s (5%) | 11.497 ms | 119.18 MiB (1%) | 1589944 | | `["rips", "dense", "dragon2000.pts"]` | 2.530 s (5%) | 33.016 ms | 301.15 MiB (1%) | 227714 | | `["rips", "dense", "fract-r.dist"]` | 18.311 s (5%) | 282.444 ms | 1.79 GiB (1%) | 186542 | | `["rips", "dense", "o3_1024.pts"]` | 5.271 s (5%) | 61.205 ms | 449.01 MiB (1%) | 2377101 | | `["rips", "sparse", "alpha_3_sphere_3000.spdist"]` | 2.351 s (5%) | 11.581 ms | 169.07 MiB (1%) | 2379092 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 6.265 s (5%) | 31.925 ms | 546.60 MiB (1%) | 3185361 | | `["rips", "sparse", "alpha_5_sphere_1000.spdist"]` | 40.739 s (5%) | 417.362 ms | 3.40 GiB (1%) | 3016230 | | `["rips", "sparse", "dragon2000.pts"]` | 2.803 s (5%) | 34.508 ms | 331.51 MiB (1%) | 223713 | | `["rips", "sparse", "fract-r.dist"]` | 20.027 s (5%) | 276.888 ms | 1.80 GiB (1%) | 185517 | | `["rips", "sparse", "o3_1024.pts"]` | 2.591 s (5%) | 35.831 ms | 341.76 MiB (1%) | 166323 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1025-azure #25~18.04.1-Ubuntu SMP Sat Sep 5 15:28:57 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 27394 s 0 s 2013 s 12089 s 0 s #2 2294 MHz 6814 s 0 s 1752 s 32809 s 0 s Memory: 6.791393280029297 GB (2738.9140625 MB free) Uptime: 433.0 sec Load Avg: 1.00146484375 0.91650390625 0.4970703125 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, broadwell) ``` --- # Baseline result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 2 Oct 2020 - 0:37 * Package commit: dfe77a * Julia commit: 539f3c * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["cubical", "bonsai128.dipha"]` | 25.132 s (5%) | 640.842 ms | 4.13 GiB (1%) | 53518978 | | `["cubical", "bonsai64.dipha"]` | 2.381 s (5%) | 53.866 ms | 582.26 MiB (1%) | 7104718 | | `["cubical", "lena1024.dipha"]` | 2.079 s (5%) | 204.799 ms | 952.84 MiB (1%) | 14470858 | | `["cubical", "lena2048.dipha"]` | 7.703 s (5%) | 515.565 ms | 2.68 GiB (1%) | 33883104 | | `["homology", "bonsai64.dipha"]` | 7.825 s (5%) | 203.958 ms | 911.57 MiB (1%) | 11462668 | | `["homology", "klein200.pts"]` | 2.377 s (5%) | 14.092 ms | 110.58 MiB (1%) | 2060666 | | `["homology", "lena1024.dipha"]` | 6.450 s (5%) | 236.469 ms | 1.11 GiB (1%) | 16807708 | | `["homology", "sphere100.pts"]` | 1.519 s (5%) | 12.294 ms | 119.18 MiB (1%) | 1589945 | | `["rips", "dense", "dragon2000.pts"]` | 2.545 s (5%) | 36.243 ms | 301.15 MiB (1%) | 227714 | | `["rips", "dense", "fract-r.dist"]` | 19.687 s (5%) | 305.355 ms | 1.79 GiB (1%) | 186542 | | `["rips", "dense", "o3_1024.pts"]` | 5.157 s (5%) | 63.782 ms | 449.01 MiB (1%) | 2377101 | | `["rips", "sparse", "alpha_3_sphere_3000.spdist"]` | 2.423 s (5%) | 12.286 ms | 169.07 MiB (1%) | 2379092 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 6.191 s (5%) | 35.787 ms | 546.60 MiB (1%) | 3185360 | | `["rips", "sparse", "alpha_5_sphere_1000.spdist"]` | 40.644 s (5%) | 445.891 ms | 3.40 GiB (1%) | 3016230 | | `["rips", "sparse", "dragon2000.pts"]` | 2.815 s (5%) | 36.143 ms | 331.51 MiB (1%) | 223713 | | `["rips", "sparse", "fract-r.dist"]` | 19.980 s (5%) | 294.750 ms | 1.80 GiB (1%) | 185517 | | `["rips", "sparse", "o3_1024.pts"]` | 2.493 s (5%) | 39.953 ms | 341.76 MiB (1%) | 166323 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1025-azure #25~18.04.1-Ubuntu SMP Sat Sep 5 15:28:57 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 27984 s 0 s 2084 s 34066 s 0 s #2 2294 MHz 28279 s 0 s 2493 s 33283 s 0 s Memory: 6.791393280029297 GB (2743.44140625 MB free) Uptime: 660.0 sec Load Avg: 1.10546875 1.0146484375 0.6357421875 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, broadwell) ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 2 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian CPU(s): 2 On-line CPU(s) list: 0,1 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 NUMA node(s): 1 Vendor ID: GenuineIntel CPU family: 6 Model: 79 Model name: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz Stepping: 1 CPU MHz: 2294.686 BogoMIPS: 4589.37 Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 32K L1i cache: 32K L2 cache: 256K L3 cache: 51200K NUMA node0 CPU(s): 0,1 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm rdseed adx smap xsaveopt md_clear | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz | | Vendor | :Intel | | Architecture | :Broadwell | | Model | Family: 0x06, Model: 0x4f, Stepping: 0x01, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 256, 51200) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 46 bits physical | | SIMD | 256 bit = 32 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |