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mtsch / Ripserer.jl

Flexible and efficient persistent homology computation.
https://mtsch.github.io/Ripserer.jl/dev/
MIT License
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Revert progress meter dt in zerodimensional, bump version #110

Closed mtsch closed 4 years ago

codecov[bot] commented 4 years ago

Codecov Report

Merging #110 into master will not change coverage. The diff coverage is n/a.

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@@           Coverage Diff           @@
##           master     #110   +/-   ##
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  Coverage   95.81%   95.81%           
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  Files          18       18           
  Lines        1148     1148           
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  Hits         1100     1100           
  Misses         48       48
Impacted Files Coverage Δ
src/computation/zerodimensional.jl 100.00% <ø> (ø)

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github-actions[bot] commented 4 years ago
Benchmark result # Judge result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmarks: - Target: 6 Oct 2020 - 02:54 - Baseline: 6 Oct 2020 - 02:58 * Package commits: - Target: ba271b - Baseline: 08e2b8 * Julia commits: - Target: 539f3c - Baseline: 539f3c * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |----------------------------------------------------|------------------------------|--------------| | `["rips", "sparse", "o3_1024.pts"]` | 0.91 (5%) :white_check_mark: | 1.00 (1%) | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ### Target ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1025-azure #25~18.04.1-Ubuntu SMP Sat Sep 5 15:28:57 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v3 @ 2.40GHz: speed user nice sys idle irq #1 2394 MHz 7523 s 0 s 1384 s 40307 s 0 s #2 2394 MHz 32641 s 0 s 2326 s 14073 s 0 s Memory: 6.791393280029297 GB (2761.07421875 MB free) Uptime: 506.0 sec Load Avg: 1.0078125 0.890625 0.48974609375 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, haswell) ``` ### Baseline ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1025-azure #25~18.04.1-Ubuntu SMP Sat Sep 5 15:28:57 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v3 @ 2.40GHz: speed user nice sys idle irq #1 2394 MHz 33187 s 0 s 2085 s 41259 s 0 s #2 2394 MHz 33723 s 0 s 2408 s 40179 s 0 s Memory: 6.791393280029297 GB (2598.59765625 MB free) Uptime: 779.0 sec Load Avg: 1.0 0.9638671875 0.63134765625 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, haswell) ``` --- # Target result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 6 Oct 2020 - 2:54 * Package commit: ba271b * Julia commit: 539f3c * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["cubical", "bonsai128.dipha"]` | 31.358 s (5%) | 725.861 ms | 4.13 GiB (1%) | 53514805 | | `["cubical", "bonsai64.dipha"]` | 2.988 s (5%) | 55.277 ms | 582.26 MiB (1%) | 7104718 | | `["cubical", "lena1024.dipha"]` | 2.417 s (5%) | 226.506 ms | 952.84 MiB (1%) | 14470858 | | `["cubical", "lena2048.dipha"]` | 8.950 s (5%) | 555.191 ms | 2.68 GiB (1%) | 33880712 | | `["homology", "bonsai64.dipha"]` | 9.574 s (5%) | 216.697 ms | 911.63 MiB (1%) | 11464239 | | `["homology", "klein200.pts"]` | 2.764 s (5%) | 14.490 ms | 102.41 MiB (1%) | 1896088 | | `["homology", "lena1024.dipha"]` | 7.720 s (5%) | 213.108 ms | 1.11 GiB (1%) | 16808649 | | `["homology", "sphere100.pts"]` | 1.837 s (5%) | 13.046 ms | 119.16 MiB (1%) | 1589567 | | `["rips", "dense", "dragon2000.pts"]` | 3.105 s (5%) | 33.604 ms | 301.15 MiB (1%) | 227714 | | `["rips", "dense", "fract-r.dist"]` | 20.719 s (5%) | 301.590 ms | 1.79 GiB (1%) | 186542 | | `["rips", "dense", "o3_1024.pts"]` | 6.224 s (5%) | 64.899 ms | 448.90 MiB (1%) | 2374971 | | `["rips", "sparse", "alpha_3_sphere_3000.spdist"]` | 2.879 s (5%) | 13.484 ms | 168.90 MiB (1%) | 2376407 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 7.605 s (5%) | 36.692 ms | 546.54 MiB (1%) | 3184458 | | `["rips", "sparse", "alpha_5_sphere_1000.spdist"]` | 48.617 s (5%) | 433.391 ms | 3.40 GiB (1%) | 3015311 | | `["rips", "sparse", "dragon2000.pts"]` | 3.386 s (5%) | 34.673 ms | 331.51 MiB (1%) | 223713 | | `["rips", "sparse", "fract-r.dist"]` | 23.146 s (5%) | 299.160 ms | 1.80 GiB (1%) | 185517 | | `["rips", "sparse", "o3_1024.pts"]` | 2.997 s (5%) | 39.371 ms | 341.76 MiB (1%) | 166323 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1025-azure #25~18.04.1-Ubuntu SMP Sat Sep 5 15:28:57 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v3 @ 2.40GHz: speed user nice sys idle irq #1 2394 MHz 7523 s 0 s 1384 s 40307 s 0 s #2 2394 MHz 32641 s 0 s 2326 s 14073 s 0 s Memory: 6.791393280029297 GB (2761.07421875 MB free) Uptime: 506.0 sec Load Avg: 1.0078125 0.890625 0.48974609375 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, haswell) ``` --- # Baseline result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 6 Oct 2020 - 2:58 * Package commit: 08e2b8 * Julia commit: 539f3c * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["cubical", "bonsai128.dipha"]` | 31.236 s (5%) | 737.790 ms | 4.13 GiB (1%) | 53514803 | | `["cubical", "bonsai64.dipha"]` | 3.042 s (5%) | 54.091 ms | 582.26 MiB (1%) | 7104718 | | `["cubical", "lena1024.dipha"]` | 2.359 s (5%) | 116.069 ms | 952.84 MiB (1%) | 14470858 | | `["cubical", "lena2048.dipha"]` | 8.860 s (5%) | 565.571 ms | 2.68 GiB (1%) | 33880711 | | `["homology", "bonsai64.dipha"]` | 9.245 s (5%) | 61.516 ms | 911.64 MiB (1%) | 11464450 | | `["homology", "klein200.pts"]` | 2.728 s (5%) | 14.085 ms | 102.43 MiB (1%) | 1896465 | | `["homology", "lena1024.dipha"]` | 7.813 s (5%) | 258.987 ms | 1.11 GiB (1%) | 16808852 | | `["homology", "sphere100.pts"]` | 1.867 s (5%) | 12.850 ms | 119.17 MiB (1%) | 1589567 | | `["rips", "dense", "dragon2000.pts"]` | 3.086 s (5%) | 40.289 ms | 301.15 MiB (1%) | 227714 | | `["rips", "dense", "fract-r.dist"]` | 20.857 s (5%) | 328.156 ms | 1.79 GiB (1%) | 186542 | | `["rips", "dense", "o3_1024.pts"]` | 6.276 s (5%) | 33.371 ms | 448.90 MiB (1%) | 2374974 | | `["rips", "sparse", "alpha_3_sphere_3000.spdist"]` | 2.875 s (5%) | 12.976 ms | 168.90 MiB (1%) | 2376616 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 7.699 s (5%) | 36.600 ms | 546.54 MiB (1%) | 3184457 | | `["rips", "sparse", "alpha_5_sphere_1000.spdist"]` | 49.010 s (5%) | 459.297 ms | 3.40 GiB (1%) | 3015310 | | `["rips", "sparse", "dragon2000.pts"]` | 3.382 s (5%) | 40.256 ms | 331.51 MiB (1%) | 223713 | | `["rips", "sparse", "fract-r.dist"]` | 23.597 s (5%) | 329.368 ms | 1.80 GiB (1%) | 185517 | | `["rips", "sparse", "o3_1024.pts"]` | 3.301 s (5%) | 47.485 ms | 341.76 MiB (1%) | 166323 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1025-azure #25~18.04.1-Ubuntu SMP Sat Sep 5 15:28:57 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v3 @ 2.40GHz: speed user nice sys idle irq #1 2394 MHz 33187 s 0 s 2085 s 41259 s 0 s #2 2394 MHz 33723 s 0 s 2408 s 40179 s 0 s Memory: 6.791393280029297 GB (2598.59765625 MB free) Uptime: 779.0 sec Load Avg: 1.0 0.9638671875 0.63134765625 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, haswell) ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 2 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian CPU(s): 2 On-line CPU(s) list: 0,1 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 NUMA node(s): 1 Vendor ID: GenuineIntel CPU family: 6 Model: 63 Model name: Intel(R) Xeon(R) CPU E5-2673 v3 @ 2.40GHz Stepping: 2 CPU MHz: 2394.456 BogoMIPS: 4788.91 Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 32K L1i cache: 32K L2 cache: 256K L3 cache: 30720K NUMA node0 CPU(s): 0,1 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm invpcid_single pti fsgsbase bmi1 avx2 smep bmi2 erms invpcid xsaveopt md_clear | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) CPU E5-2673 v3 @ 2.40GHz | | Vendor | :Intel | | Architecture | :Haswell | | Model | Family: 0x06, Model: 0x3f, Stepping: 0x02, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 256, 30720) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 46 bits physical | | SIMD | 256 bit = 32 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |
github-actions[bot] commented 4 years ago
Benchmark result # Judge result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmarks: - Target: 6 Oct 2020 - 03:01 - Baseline: 6 Oct 2020 - 03:05 * Package commits: - Target: 485431 - Baseline: 08e2b8 * Julia commits: - Target: 539f3c - Baseline: 539f3c * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |----------------------------------------------------|---------------|--------------| | `["homology", "klein200.pts"]` | 1.06 (5%) :x: | 1.00 (1%) | | `["rips", "dense", "dragon2000.pts"]` | 1.06 (5%) :x: | 1.00 (1%) | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ### Target ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1025-azure #25~18.04.1-Ubuntu SMP Sat Sep 5 15:28:57 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 26060 s 0 s 1984 s 13468 s 0 s #2 2095 MHz 8155 s 0 s 1645 s 31928 s 0 s Memory: 6.764892578125 GB (2667.59375 MB free) Uptime: 433.0 sec Load Avg: 1.0 0.8369140625 0.43505859375 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512) ``` ### Baseline ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1025-azure #25~18.04.1-Ubuntu SMP Sat Sep 5 15:28:57 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 45871 s 0 s 2586 s 16136 s 0 s #2 2095 MHz 10805 s 0 s 1888 s 52115 s 0 s Memory: 6.764892578125 GB (2638.421875 MB free) Uptime: 664.0 sec Load Avg: 1.05615234375 0.94677734375 0.57373046875 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512) ``` --- # Target result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 6 Oct 2020 - 3:1 * Package commit: 485431 * Julia commit: 539f3c * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["cubical", "bonsai128.dipha"]` | 27.093 s (5%) | 685.788 ms | 4.13 GiB (1%) | 53514796 | | `["cubical", "bonsai64.dipha"]` | 2.531 s (5%) | 49.418 ms | 582.26 MiB (1%) | 7104718 | | `["cubical", "lena1024.dipha"]` | 2.023 s (5%) | 98.123 ms | 952.84 MiB (1%) | 14470858 | | `["cubical", "lena2048.dipha"]` | 7.832 s (5%) | 500.293 ms | 2.68 GiB (1%) | 33880708 | | `["homology", "bonsai64.dipha"]` | 7.925 s (5%) | 199.483 ms | 911.63 MiB (1%) | 11464220 | | `["homology", "klein200.pts"]` | 2.306 s (5%) | 13.814 ms | 102.41 MiB (1%) | 1896099 | | `["homology", "lena1024.dipha"]` | 6.538 s (5%) | 245.531 ms | 1.11 GiB (1%) | 16808641 | | `["homology", "sphere100.pts"]` | 1.410 s (5%) | 12.472 ms | 119.17 MiB (1%) | 1589548 | | `["rips", "dense", "dragon2000.pts"]` | 2.686 s (5%) | 33.885 ms | 301.15 MiB (1%) | 227714 | | `["rips", "dense", "fract-r.dist"]` | 19.078 s (5%) | 283.226 ms | 1.79 GiB (1%) | 186542 | | `["rips", "dense", "o3_1024.pts"]` | 5.276 s (5%) | 60.675 ms | 448.90 MiB (1%) | 2374944 | | `["rips", "sparse", "alpha_3_sphere_3000.spdist"]` | 2.334 s (5%) | 12.798 ms | 168.89 MiB (1%) | 2376435 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 6.722 s (5%) | 34.088 ms | 546.54 MiB (1%) | 3184442 | | `["rips", "sparse", "alpha_5_sphere_1000.spdist"]` | 44.109 s (5%) | 420.838 ms | 3.40 GiB (1%) | 3015294 | | `["rips", "sparse", "dragon2000.pts"]` | 2.866 s (5%) | 32.520 ms | 331.51 MiB (1%) | 223713 | | `["rips", "sparse", "fract-r.dist"]` | 20.057 s (5%) | 285.768 ms | 1.80 GiB (1%) | 185517 | | `["rips", "sparse", "o3_1024.pts"]` | 2.587 s (5%) | 35.296 ms | 341.76 MiB (1%) | 166323 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1025-azure #25~18.04.1-Ubuntu SMP Sat Sep 5 15:28:57 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 26060 s 0 s 1984 s 13468 s 0 s #2 2095 MHz 8155 s 0 s 1645 s 31928 s 0 s Memory: 6.764892578125 GB (2667.59375 MB free) Uptime: 433.0 sec Load Avg: 1.0 0.8369140625 0.43505859375 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512) ``` --- # Baseline result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 6 Oct 2020 - 3:5 * Package commit: 08e2b8 * Julia commit: 539f3c * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["cubical", "bonsai128.dipha"]` | 26.769 s (5%) | 672.849 ms | 4.13 GiB (1%) | 53514795 | | `["cubical", "bonsai64.dipha"]` | 2.584 s (5%) | 52.155 ms | 582.26 MiB (1%) | 7104718 | | `["cubical", "lena1024.dipha"]` | 2.122 s (5%) | 103.996 ms | 952.84 MiB (1%) | 14470858 | | `["cubical", "lena2048.dipha"]` | 8.224 s (5%) | 506.499 ms | 2.68 GiB (1%) | 33880706 | | `["homology", "bonsai64.dipha"]` | 7.986 s (5%) | 200.008 ms | 911.63 MiB (1%) | 11464426 | | `["homology", "klein200.pts"]` | 2.173 s (5%) | 13.473 ms | 102.42 MiB (1%) | 1896476 | | `["homology", "lena1024.dipha"]` | 6.755 s (5%) | 237.681 ms | 1.11 GiB (1%) | 16808848 | | `["homology", "sphere100.pts"]` | 1.438 s (5%) | | 119.16 MiB (1%) | 1589548 | | `["rips", "dense", "dragon2000.pts"]` | 2.542 s (5%) | 32.006 ms | 301.15 MiB (1%) | 227714 | | `["rips", "dense", "fract-r.dist"]` | 18.306 s (5%) | 281.998 ms | 1.79 GiB (1%) | 186542 | | `["rips", "dense", "o3_1024.pts"]` | 5.314 s (5%) | 60.020 ms | 448.89 MiB (1%) | 2374942 | | `["rips", "sparse", "alpha_3_sphere_3000.spdist"]` | 2.297 s (5%) | 12.361 ms | 168.90 MiB (1%) | 2376643 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 6.605 s (5%) | 33.692 ms | 546.56 MiB (1%) | 3184446 | | `["rips", "sparse", "alpha_5_sphere_1000.spdist"]` | 43.610 s (5%) | 418.403 ms | 3.40 GiB (1%) | 3015288 | | `["rips", "sparse", "dragon2000.pts"]` | 2.930 s (5%) | 31.548 ms | 331.51 MiB (1%) | 223713 | | `["rips", "sparse", "fract-r.dist"]` | 20.130 s (5%) | 281.711 ms | 1.80 GiB (1%) | 185517 | | `["rips", "sparse", "o3_1024.pts"]` | 2.632 s (5%) | 35.225 ms | 341.76 MiB (1%) | 166323 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1025-azure #25~18.04.1-Ubuntu SMP Sat Sep 5 15:28:57 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 45871 s 0 s 2586 s 16136 s 0 s #2 2095 MHz 10805 s 0 s 1888 s 52115 s 0 s Memory: 6.764892578125 GB (2638.421875 MB free) Uptime: 664.0 sec Load Avg: 1.05615234375 0.94677734375 0.57373046875 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512) ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 2 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian CPU(s): 2 On-line CPU(s) list: 0,1 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 NUMA node(s): 1 Vendor ID: GenuineIntel CPU family: 6 Model: 85 Model name: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz Stepping: 4 CPU MHz: 2095.110 BogoMIPS: 4190.22 Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 32K L1i cache: 32K L2 cache: 1024K L3 cache: 36608K NUMA node0 CPU(s): 0,1 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm mpx avx512f avx512dq rdseed adx smap clflushopt avx512cd avx512bw avx512vl xsaveopt xsavec xsaves md_clear | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz | | Vendor | :Intel | | Architecture | :Skylake | | Model | Family: 0x06, Model: 0x55, Stepping: 0x04, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 1024, 36608) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 44 bits physical | | SIMD | 512 bit = 64 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |