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mtsch
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Ripserer.jl
Flexible and efficient persistent homology computation.
https://mtsch.github.io/Ripserer.jl/dev/
MIT License
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MLJ.jl integration
#115
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mtsch
closed
3 years ago
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commented
4 years ago
Benchmark result
# Judge result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmarks: - Target: 16 Oct 2020 - 23:25 - Baseline: 16 Oct 2020 - 23:30 * Package commits: - Target: 103423 - Baseline: bb91b8 * Julia commits: - Target: 539f3c - Baseline: 539f3c * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |----------------------------------------------------|------------------------------|--------------| | `["cubical", "bonsai64.dipha"]` | 0.92 (5%) :white_check_mark: | 1.00 (1%) | | `["cubical", "lena1024.dipha"]` | 0.95 (5%) :white_check_mark: | 1.00 (1%) | | `["cubical", "lena2048.dipha"]` | 0.94 (5%) :white_check_mark: | 1.00 (1%) | | `["homology", "klein200.pts"]` | 1.08 (5%) :x: | 1.00 (1%) | | `["homology", "lena1024.dipha"]` | 1.14 (5%) :x: | 1.00 (1%) | | `["homology", "sphere100.pts"]` | 1.09 (5%) :x: | 1.00 (1%) | | `["rips", "dense", "dragon2000.pts"]` | 1.08 (5%) :x: | 1.00 (1%) | | `["rips", "dense", "o3_1024.pts"]` | 1.12 (5%) :x: | 1.00 (1%) | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ### Target ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1026-azure #26~18.04.1-Ubuntu SMP Thu Sep 10 16:19:25 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 33988 s 0 s 2324 s 14710 s 0 s #2 2294 MHz 10166 s 0 s 2140 s 39314 s 0 s Memory: 6.791393280029297 GB (2528.19140625 MB free) Uptime: 535.0 sec Load Avg: 1.0048828125 0.91796875 0.51708984375 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, broadwell) ``` ### Baseline ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1026-azure #26~18.04.1-Ubuntu SMP Thu Sep 10 16:19:25 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 34808 s 0 s 2417 s 41654 s 0 s #2 2294 MHz 36551 s 0 s 2985 s 40006 s 0 s Memory: 6.791393280029297 GB (2623.5625 MB free) Uptime: 815.0 sec Load Avg: 1.0 0.98388671875 0.65869140625 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, broadwell) ``` --- # Target result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 16 Oct 2020 - 23:25 * Package commit: 103423 * Julia commit: 539f3c * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["cubical", "bonsai128.dipha"]` | 31.211 s (5%) | 778.486 ms | 4.13 GiB (1%) | 53514832 | | `["cubical", "bonsai64.dipha"]` | 2.807 s (5%) | 58.673 ms | 582.26 MiB (1%) | 7104718 | | `["cubical", "lena1024.dipha"]` | 2.511 s (5%) | 122.877 ms | 952.84 MiB (1%) | 14470858 | | `["cubical", "lena2048.dipha"]` | 9.383 s (5%) | 603.854 ms | 2.68 GiB (1%) | 33880747 | | `["homology", "bonsai64.dipha"]` | 9.880 s (5%) | 251.573 ms | 911.66 MiB (1%) | 11464583 | | `["homology", "klein200.pts"]` | 2.888 s (5%) | 16.579 ms | 102.41 MiB (1%) | 1896240 | | `["homology", "lena1024.dipha"]` | 8.504 s (5%) | 245.941 ms | 1.11 GiB (1%) | 16808989 | | `["homology", "sphere100.pts"]` | 1.980 s (5%) | 15.580 ms | 119.16 MiB (1%) | 1589560 | | `["rips", "dense", "dragon2000.pts"]` | 3.369 s (5%) | 41.431 ms | 301.15 MiB (1%) | 227714 | | `["rips", "dense", "fract-r.dist"]` | 22.937 s (5%) | 348.066 ms | 1.79 GiB (1%) | 186542 | | `["rips", "dense", "o3_1024.pts"]` | 6.886 s (5%) | 80.588 ms | 448.90 MiB (1%) | 2374993 | | `["rips", "sparse", "alpha_3_sphere_3000.spdist"]` | 2.930 s (5%) | 15.571 ms | 168.91 MiB (1%) | 2376567 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 7.765 s (5%) | 40.844 ms | 546.54 MiB (1%) | 3184459 | | `["rips", "sparse", "alpha_5_sphere_1000.spdist"]` | 52.378 s (5%) | 494.135 ms | 3.40 GiB (1%) | 3015304 | | `["rips", "sparse", "dragon2000.pts"]` | 3.523 s (5%) | 42.170 ms | 331.51 MiB (1%) | 223713 | | `["rips", "sparse", "fract-r.dist"]` | 24.760 s (5%) | 347.939 ms | 1.80 GiB (1%) | 185517 | | `["rips", "sparse", "o3_1024.pts"]` | 3.138 s (5%) | 47.703 ms | 341.76 MiB (1%) | 166323 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1026-azure #26~18.04.1-Ubuntu SMP Thu Sep 10 16:19:25 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 33988 s 0 s 2324 s 14710 s 0 s #2 2294 MHz 10166 s 0 s 2140 s 39314 s 0 s Memory: 6.791393280029297 GB (2528.19140625 MB free) Uptime: 535.0 sec Load Avg: 1.0048828125 0.91796875 0.51708984375 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, broadwell) ``` --- # Baseline result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 16 Oct 2020 - 23:30 * Package commit: bb91b8 * Julia commit: 539f3c * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["cubical", "bonsai128.dipha"]` | 32.081 s (5%) | 811.124 ms | 4.13 GiB (1%) | 53514832 | | `["cubical", "bonsai64.dipha"]` | 3.066 s (5%) | 64.147 ms | 582.26 MiB (1%) | 7104718 | | `["cubical", "lena1024.dipha"]` | 2.656 s (5%) | 122.960 ms | 952.84 MiB (1%) | 14470858 | | `["cubical", "lena2048.dipha"]` | 9.938 s (5%) | 623.109 ms | 2.68 GiB (1%) | 33880745 | | `["homology", "bonsai64.dipha"]` | 9.441 s (5%) | 225.808 ms | 911.66 MiB (1%) | 11464584 | | `["homology", "klein200.pts"]` | 2.666 s (5%) | 16.303 ms | 102.42 MiB (1%) | 1896241 | | `["homology", "lena1024.dipha"]` | 7.479 s (5%) | 227.376 ms | 1.11 GiB (1%) | 16808989 | | `["homology", "sphere100.pts"]` | 1.812 s (5%) | 15.898 ms | 119.16 MiB (1%) | 1589555 | | `["rips", "dense", "dragon2000.pts"]` | 3.108 s (5%) | 38.898 ms | 301.15 MiB (1%) | 227714 | | `["rips", "dense", "fract-r.dist"]` | 22.110 s (5%) | 326.169 ms | 1.79 GiB (1%) | 186542 | | `["rips", "dense", "o3_1024.pts"]` | 6.148 s (5%) | 40.680 ms | 448.90 MiB (1%) | 2374995 | | `["rips", "sparse", "alpha_3_sphere_3000.spdist"]` | 2.880 s (5%) | 13.153 ms | 168.91 MiB (1%) | 2376569 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 7.625 s (5%) | 40.129 ms | 546.55 MiB (1%) | 3184462 | | `["rips", "sparse", "alpha_5_sphere_1000.spdist"]` | 50.731 s (5%) | 477.975 ms | 3.40 GiB (1%) | 3015303 | | `["rips", "sparse", "dragon2000.pts"]` | 3.364 s (5%) | 41.095 ms | 331.51 MiB (1%) | 223713 | | `["rips", "sparse", "fract-r.dist"]` | 24.575 s (5%) | 350.240 ms | 1.80 GiB (1%) | 185517 | | `["rips", "sparse", "o3_1024.pts"]` | 3.199 s (5%) | 45.066 ms | 341.76 MiB (1%) | 166323 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1026-azure #26~18.04.1-Ubuntu SMP Thu Sep 10 16:19:25 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 34808 s 0 s 2417 s 41654 s 0 s #2 2294 MHz 36551 s 0 s 2985 s 40006 s 0 s Memory: 6.791393280029297 GB (2623.5625 MB free) Uptime: 815.0 sec Load Avg: 1.0 0.98388671875 0.65869140625 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, broadwell) ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 2 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian CPU(s): 2 On-line CPU(s) list: 0,1 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 NUMA node(s): 1 Vendor ID: GenuineIntel CPU family: 6 Model: 79 Model name: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz Stepping: 1 CPU MHz: 2294.684 BogoMIPS: 4589.36 Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 32K L1i cache: 32K L2 cache: 256K L3 cache: 51200K NUMA node0 CPU(s): 0,1 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm rdseed adx smap xsaveopt md_clear | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz | | Vendor | :Intel | | Architecture | :Broadwell | | Model | Family: 0x06, Model: 0x4f, Stepping: 0x01, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 256, 51200) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 46 bits physical | | SIMD | 256 bit = 32 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |
github-actions[bot]
commented
4 years ago
Benchmark result
# Judge result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmarks: - Target: 17 Oct 2020 - 10:35 - Baseline: 17 Oct 2020 - 10:39 * Package commits: - Target: 28f3e7 - Baseline: bf10ba * Julia commits: - Target: 539f3c - Baseline: 539f3c * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |----------------------------------------------------|------------------------------|--------------| | `["cubical", "bonsai128.dipha"]` | 0.95 (5%) :white_check_mark: | 1.00 (1%) | | `["cubical", "bonsai64.dipha"]` | 0.94 (5%) :white_check_mark: | 1.00 (1%) | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ### Target ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1026-azure #26~18.04.1-Ubuntu SMP Thu Sep 10 16:19:25 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 36948 s 0 s 2465 s 10464 s 0 s #2 2095 MHz 5090 s 0 s 1901 s 42922 s 0 s Memory: 6.791393280029297 GB (2606.6953125 MB free) Uptime: 515.0 sec Load Avg: 1.03857421875 0.95361328125 0.52783203125 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512) ``` ### Baseline ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1026-azure #26~18.04.1-Ubuntu SMP Thu Sep 10 16:19:25 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 63623 s 0 s 3248 s 10865 s 0 s #2 2095 MHz 5684 s 0 s 2034 s 69961 s 0 s Memory: 6.791393280029297 GB (2636.04296875 MB free) Uptime: 793.0 sec Load Avg: 1.0205078125 1.0 0.666015625 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512) ``` --- # Target result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 17 Oct 2020 - 10:35 * Package commit: 28f3e7 * Julia commit: 539f3c * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["cubical", "bonsai128.dipha"]` | 31.991 s (5%) | 741.870 ms | 4.13 GiB (1%) | 53490229 | | `["cubical", "bonsai64.dipha"]` | 3.050 s (5%) | 52.150 ms | 582.02 MiB (1%) | 7098674 | | `["cubical", "lena1024.dipha"]` | 2.448 s (5%) | 112.339 ms | 950.02 MiB (1%) | 14391659 | | `["cubical", "lena2048.dipha"]` | 9.136 s (5%) | 556.326 ms | 2.67 GiB (1%) | 33801550 | | `["homology", "bonsai64.dipha"]` | 9.298 s (5%) | 218.971 ms | 911.24 MiB (1%) | 11455550 | | `["homology", "klein200.pts"]` | 2.700 s (5%) | 14.460 ms | 102.33 MiB (1%) | 1895635 | | `["homology", "lena1024.dipha"]` | 7.825 s (5%) | 227.700 ms | 1.10 GiB (1%) | 16726774 | | `["homology", "sphere100.pts"]` | 1.775 s (5%) | 13.254 ms | 119.11 MiB (1%) | 1589188 | | `["rips", "dense", "dragon2000.pts"]` | 3.223 s (5%) | 33.876 ms | 300.24 MiB (1%) | 219710 | | `["rips", "dense", "fract-r.dist"]` | 21.557 s (5%) | 313.397 ms | 1.79 GiB (1%) | 184490 | | `["rips", "dense", "o3_1024.pts"]` | 6.382 s (5%) | 64.246 ms | 448.43 MiB (1%) | 2370951 | | `["rips", "sparse", "alpha_3_sphere_3000.spdist"]` | 2.836 s (5%) | 12.577 ms | 167.53 MiB (1%) | 2364512 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 7.876 s (5%) | 34.497 ms | 545.63 MiB (1%) | 3176492 | | `["rips", "sparse", "alpha_5_sphere_1000.spdist"]` | 52.307 s (5%) | 454.010 ms | 3.40 GiB (1%) | 3011341 | | `["rips", "sparse", "dragon2000.pts"]` | 3.378 s (5%) | 34.407 ms | 330.60 MiB (1%) | 215709 | | `["rips", "sparse", "fract-r.dist"]` | 23.092 s (5%) | 308.628 ms | 1.80 GiB (1%) | 183465 | | `["rips", "sparse", "o3_1024.pts"]` | 3.113 s (5%) | 37.994 ms | 341.29 MiB (1%) | 162219 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1026-azure #26~18.04.1-Ubuntu SMP Thu Sep 10 16:19:25 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 36948 s 0 s 2465 s 10464 s 0 s #2 2095 MHz 5090 s 0 s 1901 s 42922 s 0 s Memory: 6.791393280029297 GB (2606.6953125 MB free) Uptime: 515.0 sec Load Avg: 1.03857421875 0.95361328125 0.52783203125 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512) ``` --- # Baseline result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 17 Oct 2020 - 10:39 * Package commit: bf10ba * Julia commit: 539f3c * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["cubical", "bonsai128.dipha"]` | 33.750 s (5%) | 753.821 ms | 4.13 GiB (1%) | 53490227 | | `["cubical", "bonsai64.dipha"]` | 3.249 s (5%) | 53.122 ms | 582.02 MiB (1%) | 7098674 | | `["cubical", "lena1024.dipha"]` | 2.487 s (5%) | 111.457 ms | 950.02 MiB (1%) | 14391659 | | `["cubical", "lena2048.dipha"]` | 9.129 s (5%) | 567.286 ms | 2.67 GiB (1%) | 33801548 | | `["homology", "bonsai64.dipha"]` | 9.754 s (5%) | 218.651 ms | 911.24 MiB (1%) | 11455547 | | `["homology", "klein200.pts"]` | 2.741 s (5%) | 14.863 ms | 102.34 MiB (1%) | 1895636 | | `["homology", "lena1024.dipha"]` | 7.726 s (5%) | 225.879 ms | 1.10 GiB (1%) | 16726772 | | `["homology", "sphere100.pts"]` | 1.765 s (5%) | 13.520 ms | 119.11 MiB (1%) | 1589183 | | `["rips", "dense", "dragon2000.pts"]` | 3.256 s (5%) | 33.725 ms | 300.24 MiB (1%) | 219710 | | `["rips", "dense", "fract-r.dist"]` | 21.433 s (5%) | 313.415 ms | 1.79 GiB (1%) | 184490 | | `["rips", "dense", "o3_1024.pts"]` | 6.426 s (5%) | 64.646 ms | 448.43 MiB (1%) | 2370952 | | `["rips", "sparse", "alpha_3_sphere_3000.spdist"]` | 2.876 s (5%) | 12.924 ms | 167.53 MiB (1%) | 2364513 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 8.058 s (5%) | 34.589 ms | 545.63 MiB (1%) | 3176490 | | `["rips", "sparse", "alpha_5_sphere_1000.spdist"]` | 52.721 s (5%) | 460.434 ms | 3.40 GiB (1%) | 3011343 | | `["rips", "sparse", "dragon2000.pts"]` | 3.448 s (5%) | 33.575 ms | 330.60 MiB (1%) | 215709 | | `["rips", "sparse", "fract-r.dist"]` | 23.279 s (5%) | 318.698 ms | 1.80 GiB (1%) | 183465 | | `["rips", "sparse", "o3_1024.pts"]` | 3.182 s (5%) | 37.970 ms | 341.29 MiB (1%) | 162219 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1026-azure #26~18.04.1-Ubuntu SMP Thu Sep 10 16:19:25 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 63623 s 0 s 3248 s 10865 s 0 s #2 2095 MHz 5684 s 0 s 2034 s 69961 s 0 s Memory: 6.791393280029297 GB (2636.04296875 MB free) Uptime: 793.0 sec Load Avg: 1.0205078125 1.0 0.666015625 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512) ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 2 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian CPU(s): 2 On-line CPU(s) list: 0,1 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 NUMA node(s): 1 Vendor ID: GenuineIntel CPU family: 6 Model: 85 Model name: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz Stepping: 4 CPU MHz: 2095.200 BogoMIPS: 4190.40 Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 32K L1i cache: 32K L2 cache: 1024K L3 cache: 36608K NUMA node0 CPU(s): 0,1 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm mpx avx512f avx512dq rdseed adx smap clflushopt avx512cd avx512bw avx512vl xsaveopt xsavec xsaves md_clear | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz | | Vendor | :Intel | | Architecture | :Skylake | | Model | Family: 0x06, Model: 0x55, Stepping: 0x04, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 1024, 36608) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 46 bits physical | | SIMD | 512 bit = 64 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |
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Benchmark result
# Judge result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmarks: - Target: 16 Oct 2020 - 23:25 - Baseline: 16 Oct 2020 - 23:30 * Package commits: - Target: 103423 - Baseline: bb91b8 * Julia commits: - Target: 539f3c - Baseline: 539f3c * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |----------------------------------------------------|------------------------------|--------------| | `["cubical", "bonsai64.dipha"]` | 0.92 (5%) :white_check_mark: | 1.00 (1%) | | `["cubical", "lena1024.dipha"]` | 0.95 (5%) :white_check_mark: | 1.00 (1%) | | `["cubical", "lena2048.dipha"]` | 0.94 (5%) :white_check_mark: | 1.00 (1%) | | `["homology", "klein200.pts"]` | 1.08 (5%) :x: | 1.00 (1%) | | `["homology", "lena1024.dipha"]` | 1.14 (5%) :x: | 1.00 (1%) | | `["homology", "sphere100.pts"]` | 1.09 (5%) :x: | 1.00 (1%) | | `["rips", "dense", "dragon2000.pts"]` | 1.08 (5%) :x: | 1.00 (1%) | | `["rips", "dense", "o3_1024.pts"]` | 1.12 (5%) :x: | 1.00 (1%) | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ### Target ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1026-azure #26~18.04.1-Ubuntu SMP Thu Sep 10 16:19:25 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 33988 s 0 s 2324 s 14710 s 0 s #2 2294 MHz 10166 s 0 s 2140 s 39314 s 0 s Memory: 6.791393280029297 GB (2528.19140625 MB free) Uptime: 535.0 sec Load Avg: 1.0048828125 0.91796875 0.51708984375 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, broadwell) ``` ### Baseline ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1026-azure #26~18.04.1-Ubuntu SMP Thu Sep 10 16:19:25 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 34808 s 0 s 2417 s 41654 s 0 s #2 2294 MHz 36551 s 0 s 2985 s 40006 s 0 s Memory: 6.791393280029297 GB (2623.5625 MB free) Uptime: 815.0 sec Load Avg: 1.0 0.98388671875 0.65869140625 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, broadwell) ``` --- # Target result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 16 Oct 2020 - 23:25 * Package commit: 103423 * Julia commit: 539f3c * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["cubical", "bonsai128.dipha"]` | 31.211 s (5%) | 778.486 ms | 4.13 GiB (1%) | 53514832 | | `["cubical", "bonsai64.dipha"]` | 2.807 s (5%) | 58.673 ms | 582.26 MiB (1%) | 7104718 | | `["cubical", "lena1024.dipha"]` | 2.511 s (5%) | 122.877 ms | 952.84 MiB (1%) | 14470858 | | `["cubical", "lena2048.dipha"]` | 9.383 s (5%) | 603.854 ms | 2.68 GiB (1%) | 33880747 | | `["homology", "bonsai64.dipha"]` | 9.880 s (5%) | 251.573 ms | 911.66 MiB (1%) | 11464583 | | `["homology", "klein200.pts"]` | 2.888 s (5%) | 16.579 ms | 102.41 MiB (1%) | 1896240 | | `["homology", "lena1024.dipha"]` | 8.504 s (5%) | 245.941 ms | 1.11 GiB (1%) | 16808989 | | `["homology", "sphere100.pts"]` | 1.980 s (5%) | 15.580 ms | 119.16 MiB (1%) | 1589560 | | `["rips", "dense", "dragon2000.pts"]` | 3.369 s (5%) | 41.431 ms | 301.15 MiB (1%) | 227714 | | `["rips", "dense", "fract-r.dist"]` | 22.937 s (5%) | 348.066 ms | 1.79 GiB (1%) | 186542 | | `["rips", "dense", "o3_1024.pts"]` | 6.886 s (5%) | 80.588 ms | 448.90 MiB (1%) | 2374993 | | `["rips", "sparse", "alpha_3_sphere_3000.spdist"]` | 2.930 s (5%) | 15.571 ms | 168.91 MiB (1%) | 2376567 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 7.765 s (5%) | 40.844 ms | 546.54 MiB (1%) | 3184459 | | `["rips", "sparse", "alpha_5_sphere_1000.spdist"]` | 52.378 s (5%) | 494.135 ms | 3.40 GiB (1%) | 3015304 | | `["rips", "sparse", "dragon2000.pts"]` | 3.523 s (5%) | 42.170 ms | 331.51 MiB (1%) | 223713 | | `["rips", "sparse", "fract-r.dist"]` | 24.760 s (5%) | 347.939 ms | 1.80 GiB (1%) | 185517 | | `["rips", "sparse", "o3_1024.pts"]` | 3.138 s (5%) | 47.703 ms | 341.76 MiB (1%) | 166323 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1026-azure #26~18.04.1-Ubuntu SMP Thu Sep 10 16:19:25 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 33988 s 0 s 2324 s 14710 s 0 s #2 2294 MHz 10166 s 0 s 2140 s 39314 s 0 s Memory: 6.791393280029297 GB (2528.19140625 MB free) Uptime: 535.0 sec Load Avg: 1.0048828125 0.91796875 0.51708984375 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, broadwell) ``` --- # Baseline result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 16 Oct 2020 - 23:30 * Package commit: bb91b8 * Julia commit: 539f3c * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["cubical", "bonsai128.dipha"]` | 32.081 s (5%) | 811.124 ms | 4.13 GiB (1%) | 53514832 | | `["cubical", "bonsai64.dipha"]` | 3.066 s (5%) | 64.147 ms | 582.26 MiB (1%) | 7104718 | | `["cubical", "lena1024.dipha"]` | 2.656 s (5%) | 122.960 ms | 952.84 MiB (1%) | 14470858 | | `["cubical", "lena2048.dipha"]` | 9.938 s (5%) | 623.109 ms | 2.68 GiB (1%) | 33880745 | | `["homology", "bonsai64.dipha"]` | 9.441 s (5%) | 225.808 ms | 911.66 MiB (1%) | 11464584 | | `["homology", "klein200.pts"]` | 2.666 s (5%) | 16.303 ms | 102.42 MiB (1%) | 1896241 | | `["homology", "lena1024.dipha"]` | 7.479 s (5%) | 227.376 ms | 1.11 GiB (1%) | 16808989 | | `["homology", "sphere100.pts"]` | 1.812 s (5%) | 15.898 ms | 119.16 MiB (1%) | 1589555 | | `["rips", "dense", "dragon2000.pts"]` | 3.108 s (5%) | 38.898 ms | 301.15 MiB (1%) | 227714 | | `["rips", "dense", "fract-r.dist"]` | 22.110 s (5%) | 326.169 ms | 1.79 GiB (1%) | 186542 | | `["rips", "dense", "o3_1024.pts"]` | 6.148 s (5%) | 40.680 ms | 448.90 MiB (1%) | 2374995 | | `["rips", "sparse", "alpha_3_sphere_3000.spdist"]` | 2.880 s (5%) | 13.153 ms | 168.91 MiB (1%) | 2376569 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 7.625 s (5%) | 40.129 ms | 546.55 MiB (1%) | 3184462 | | `["rips", "sparse", "alpha_5_sphere_1000.spdist"]` | 50.731 s (5%) | 477.975 ms | 3.40 GiB (1%) | 3015303 | | `["rips", "sparse", "dragon2000.pts"]` | 3.364 s (5%) | 41.095 ms | 331.51 MiB (1%) | 223713 | | `["rips", "sparse", "fract-r.dist"]` | 24.575 s (5%) | 350.240 ms | 1.80 GiB (1%) | 185517 | | `["rips", "sparse", "o3_1024.pts"]` | 3.199 s (5%) | 45.066 ms | 341.76 MiB (1%) | 166323 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1026-azure #26~18.04.1-Ubuntu SMP Thu Sep 10 16:19:25 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 34808 s 0 s 2417 s 41654 s 0 s #2 2294 MHz 36551 s 0 s 2985 s 40006 s 0 s Memory: 6.791393280029297 GB (2623.5625 MB free) Uptime: 815.0 sec Load Avg: 1.0 0.98388671875 0.65869140625 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, broadwell) ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 2 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian CPU(s): 2 On-line CPU(s) list: 0,1 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 NUMA node(s): 1 Vendor ID: GenuineIntel CPU family: 6 Model: 79 Model name: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz Stepping: 1 CPU MHz: 2294.684 BogoMIPS: 4589.36 Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 32K L1i cache: 32K L2 cache: 256K L3 cache: 51200K NUMA node0 CPU(s): 0,1 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm rdseed adx smap xsaveopt md_clear | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz | | Vendor | :Intel | | Architecture | :Broadwell | | Model | Family: 0x06, Model: 0x4f, Stepping: 0x01, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 256, 51200) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 46 bits physical | | SIMD | 256 bit = 32 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |