Fix error in benchmark report

[github-actions[bot]]

Benchmark result

# Judge result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmarks: - Target: 21 Oct 2020 - 01:15 - Baseline: 21 Oct 2020 - 01:20 * Package commits: - Target: 6ea8d1 - Baseline: d7b74e * Julia commits: - Target: 539f3c - Baseline: 539f3c * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |----------------------------------------------------|------------|--------------| ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ### Target ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1026-azure #26~18.04.1-Ubuntu SMP Thu Sep 10 16:19:25 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 27132 s 0 s 2199 s 18749 s 0 s #2 2294 MHz 16898 s 0 s 2112 s 29489 s 0 s Memory: 6.791393280029297 GB (2774.83984375 MB free) Uptime: 501.0 sec Load Avg: 1.123046875 1.01123046875 0.5703125 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, broadwell) ``` ### Baseline ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1026-azure #26~18.04.1-Ubuntu SMP Thu Sep 10 16:19:25 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 47212 s 0 s 2932 s 27483 s 0 s #2 2294 MHz 25674 s 0 s 2315 s 50028 s 0 s Memory: 6.791393280029297 GB (2724.55859375 MB free) Uptime: 797.0 sec Load Avg: 1.0 1.01025390625 0.70751953125 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, broadwell) ``` --- # Target result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 21 Oct 2020 - 1:15 * Package commit: 6ea8d1 * Julia commit: 539f3c * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["cubical", "bonsai128.dipha"]` | 32.579 s (5%) | 818.690 ms | 4.13 GiB (1%) | 53490222 | | `["cubical", "bonsai64.dipha"]` | 3.194 s (5%) | 63.011 ms | 582.02 MiB (1%) | 7098674 | | `["cubical", "lena1024.dipha"]` | 2.662 s (5%) | 125.844 ms | 950.02 MiB (1%) | 14391659 | | `["cubical", "lena2048.dipha"]` | 10.026 s (5%) | 617.645 ms | 2.67 GiB (1%) | 33801549 | | `["homology", "bonsai64.dipha"]` | 10.382 s (5%) | 249.761 ms | 911.23 MiB (1%) | 11455511 | | `["homology", "klein200.pts"]` | 3.129 s (5%) | 17.160 ms | 102.33 MiB (1%) | 1895633 | | `["homology", "lena1024.dipha"]` | 8.660 s (5%) | 244.513 ms | 1.10 GiB (1%) | 16726745 | | `["homology", "sphere100.pts"]` | 2.013 s (5%) | 16.688 ms | 119.11 MiB (1%) | 1589171 | | `["rips", "dense", "dragon2000.pts"]` | 3.383 s (5%) | 40.923 ms | 300.24 MiB (1%) | 219710 | | `["rips", "dense", "fract-r.dist"]` | 23.333 s (5%) | 348.472 ms | 1.79 GiB (1%) | 184490 | | `["rips", "dense", "o3_1024.pts"]` | 6.991 s (5%) | 73.957 ms | 448.42 MiB (1%) | 2370924 | | `["rips", "sparse", "alpha_3_sphere_3000.spdist"]` | 3.130 s (5%) | 17.567 ms | 167.53 MiB (1%) | 2364523 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 8.309 s (5%) | 39.289 ms | 545.63 MiB (1%) | 3176479 | | `["rips", "sparse", "alpha_5_sphere_1000.spdist"]` | 53.616 s (5%) | 515.115 ms | 3.40 GiB (1%) | 3011317 | | `["rips", "sparse", "dragon2000.pts"]` | 3.649 s (5%) | 40.955 ms | 330.60 MiB (1%) | 215709 | | `["rips", "sparse", "fract-r.dist"]` | 25.488 s (5%) | 349.343 ms | 1.80 GiB (1%) | 183465 | | `["rips", "sparse", "o3_1024.pts"]` | 3.363 s (5%) | 47.011 ms | 341.29 MiB (1%) | 162219 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1026-azure #26~18.04.1-Ubuntu SMP Thu Sep 10 16:19:25 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 27132 s 0 s 2199 s 18749 s 0 s #2 2294 MHz 16898 s 0 s 2112 s 29489 s 0 s Memory: 6.791393280029297 GB (2774.83984375 MB free) Uptime: 501.0 sec Load Avg: 1.123046875 1.01123046875 0.5703125 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, broadwell) ``` --- # Baseline result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 21 Oct 2020 - 1:20 * Package commit: d7b74e * Julia commit: 539f3c * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["cubical", "bonsai128.dipha"]` | 32.947 s (5%) | 839.880 ms | 4.13 GiB (1%) | 53490222 | | `["cubical", "bonsai64.dipha"]` | 3.228 s (5%) | 61.506 ms | 582.02 MiB (1%) | 7098674 | | `["cubical", "lena1024.dipha"]` | 2.735 s (5%) | 127.062 ms | 950.02 MiB (1%) | 14391659 | | `["cubical", "lena2048.dipha"]` | 10.022 s (5%) | 614.825 ms | 2.67 GiB (1%) | 33801549 | | `["homology", "bonsai64.dipha"]` | 10.511 s (5%) | 254.080 ms | 911.23 MiB (1%) | 11455511 | | `["homology", "klein200.pts"]` | 3.056 s (5%) | 16.966 ms | 102.33 MiB (1%) | 1895633 | | `["homology", "lena1024.dipha"]` | 8.576 s (5%) | 252.506 ms | 1.10 GiB (1%) | 16726744 | | `["homology", "sphere100.pts"]` | 1.973 s (5%) | 14.114 ms | 119.11 MiB (1%) | 1589172 | | `["rips", "dense", "dragon2000.pts"]` | 3.406 s (5%) | 39.382 ms | 300.24 MiB (1%) | 219710 | | `["rips", "dense", "fract-r.dist"]` | 23.875 s (5%) | 336.420 ms | 1.79 GiB (1%) | 184490 | | `["rips", "dense", "o3_1024.pts"]` | 7.197 s (5%) | 75.947 ms | 448.42 MiB (1%) | 2370924 | | `["rips", "sparse", "alpha_3_sphere_3000.spdist"]` | 3.161 s (5%) | 14.820 ms | 167.53 MiB (1%) | 2364523 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 8.247 s (5%) | 39.031 ms | 545.63 MiB (1%) | 3176478 | | `["rips", "sparse", "alpha_5_sphere_1000.spdist"]` | 53.756 s (5%) | 516.208 ms | 3.40 GiB (1%) | 3011318 | | `["rips", "sparse", "dragon2000.pts"]` | 3.645 s (5%) | 39.498 ms | 330.60 MiB (1%) | 215709 | | `["rips", "sparse", "fract-r.dist"]` | 25.877 s (5%) | 352.421 ms | 1.80 GiB (1%) | 183465 | | `["rips", "sparse", "o3_1024.pts"]` | 3.335 s (5%) | 46.621 ms | 341.29 MiB (1%) | 162219 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1026-azure #26~18.04.1-Ubuntu SMP Thu Sep 10 16:19:25 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 47212 s 0 s 2932 s 27483 s 0 s #2 2294 MHz 25674 s 0 s 2315 s 50028 s 0 s Memory: 6.791393280029297 GB (2724.55859375 MB free) Uptime: 797.0 sec Load Avg: 1.0 1.01025390625 0.70751953125 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, broadwell) ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 2 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian CPU(s): 2 On-line CPU(s) list: 0,1 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 NUMA node(s): 1 Vendor ID: GenuineIntel CPU family: 6 Model: 79 Model name: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz Stepping: 1 CPU MHz: 2294.686 BogoMIPS: 4589.37 Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 32K L1i cache: 32K L2 cache: 256K L3 cache: 51200K NUMA node0 CPU(s): 0,1 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm rdseed adx smap xsaveopt md_clear | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz | | Vendor | :Intel | | Architecture | :Broadwell | | Model | Family: 0x06, Model: 0x4f, Stepping: 0x01, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 256, 51200) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 46 bits physical | | SIMD | 256 bit = 32 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |