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mtsch / Ripserer.jl

Flexible and efficient persistent homology computation.
https://mtsch.github.io/Ripserer.jl/dev/
MIT License
66 stars 8 forks source link

Optimize vertices for 1-simplices #125

Closed mtsch closed 4 years ago

github-actions[bot] commented 4 years ago
Benchmark result # Judge result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmarks: - Target: 8 Nov 2020 - 23:16 - Baseline: 8 Nov 2020 - 23:21 * Package commits: - Target: 97fa29 - Baseline: 7dfbe6 * Julia commits: - Target: 539f3c - Baseline: 539f3c * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |----------------------------------------------------|------------------------------|--------------| | `["rips", "dense", "dragon2000.pts"]` | 0.89 (5%) :white_check_mark: | 1.00 (1%) | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 0.93 (5%) :white_check_mark: | 1.00 (1%) | | `["rips", "sparse", "dragon2000.pts"]` | 0.89 (5%) :white_check_mark: | 1.00 (1%) | | `["rips", "sparse", "o3_1024.pts"]` | 0.93 (5%) :white_check_mark: | 1.00 (1%) | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ### Target ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1031-azure #32~18.04.1-Ubuntu SMP Tue Oct 6 10:03:22 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 9283 s 0 s 1613 s 32832 s 0 s #2 2095 MHz 30882 s 0 s 2546 s 10771 s 0 s Memory: 6.791393280029297 GB (2597.390625 MB free) Uptime: 459.0 sec Load Avg: 1.0 0.9150390625 0.50439453125 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512) ``` ### Baseline ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1031-azure #32~18.04.1-Ubuntu SMP Tue Oct 6 10:03:22 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 10752 s 0 s 1716 s 58689 s 0 s #2 2095 MHz 56280 s 0 s 3312 s 12107 s 0 s Memory: 6.791393280029297 GB (2671.875 MB free) Uptime: 734.0 sec Load Avg: 1.0185546875 0.986328125 0.6484375 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512) ``` --- # Target result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 8 Nov 2020 - 23:16 * Package commit: 97fa29 * Julia commit: 539f3c * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["cubical", "bonsai128.dipha"]` | 34.209 s (5%) | 948.805 ms | 4.88 GiB (1%) | 88743487 | | `["cubical", "bonsai64.dipha"]` | 3.193 s (5%) | 66.438 ms | 608.02 MiB (1%) | 9778746 | | `["cubical", "lena1024.dipha"]` | 2.011 s (5%) | 76.514 ms | 625.26 MiB (1%) | 7316704 | | `["cubical", "lena2048.dipha"]` | 8.907 s (5%) | 438.065 ms | 2.37 GiB (1%) | 27943778 | | `["homology", "bonsai64.dipha"]` | 10.794 s (5%) | 265.905 ms | 1.10 GiB (1%) | 19657255 | | `["homology", "klein200.pts"]` | 2.448 s (5%) | 13.167 ms | 107.56 MiB (1%) | 1809327 | | `["homology", "lena1024.dipha"]` | 8.137 s (5%) | 228.448 ms | 902.42 MiB (1%) | 13952729 | | `["homology", "sphere100.pts"]` | 1.624 s (5%) | 13.787 ms | 117.25 MiB (1%) | 1562443 | | `["rips", "dense", "dragon2000.pts"]` | 2.770 s (5%) | 5.273 ms | 292.15 MiB (1%) | 41825 | | `["rips", "dense", "fract-r.dist"]` | 20.209 s (5%) | 313.126 ms | 1.79 GiB (1%) | 98763 | | `["rips", "dense", "o3_1024.pts"]` | 6.012 s (5%) | 32.842 ms | 439.30 MiB (1%) | 2211203 | | `["rips", "sparse", "alpha_3_sphere_3000.spdist"]` | 2.865 s (5%) | 14.592 ms | 167.01 MiB (1%) | 2108390 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 7.276 s (5%) | 31.412 ms | 538.70 MiB (1%) | 3044024 | | `["rips", "sparse", "alpha_5_sphere_1000.spdist"]` | 50.366 s (5%) | 463.670 ms | 3.42 GiB (1%) | 3691898 | | `["rips", "sparse", "dragon2000.pts"]` | 2.963 s (5%) | 34.387 ms | 322.51 MiB (1%) | 37824 | | `["rips", "sparse", "fract-r.dist"]` | 22.131 s (5%) | 315.185 ms | 1.79 GiB (1%) | 97738 | | `["rips", "sparse", "o3_1024.pts"]` | 2.910 s (5%) | 38.524 ms | 337.97 MiB (1%) | 137090 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1031-azure #32~18.04.1-Ubuntu SMP Tue Oct 6 10:03:22 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 9283 s 0 s 1613 s 32832 s 0 s #2 2095 MHz 30882 s 0 s 2546 s 10771 s 0 s Memory: 6.791393280029297 GB (2597.390625 MB free) Uptime: 459.0 sec Load Avg: 1.0 0.9150390625 0.50439453125 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512) ``` --- # Baseline result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 8 Nov 2020 - 23:21 * Package commit: 7dfbe6 * Julia commit: 539f3c * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["cubical", "bonsai128.dipha"]` | 33.228 s (5%) | 949.041 ms | 4.88 GiB (1%) | 88743481 | | `["cubical", "bonsai64.dipha"]` | 3.122 s (5%) | 65.829 ms | 608.02 MiB (1%) | 9778746 | | `["cubical", "lena1024.dipha"]` | 2.053 s (5%) | 75.534 ms | 625.26 MiB (1%) | 7316704 | | `["cubical", "lena2048.dipha"]` | 8.908 s (5%) | 434.298 ms | 2.37 GiB (1%) | 27943778 | | `["homology", "bonsai64.dipha"]` | 10.675 s (5%) | 265.415 ms | 1.10 GiB (1%) | 19657260 | | `["homology", "klein200.pts"]` | 2.552 s (5%) | 13.022 ms | 107.57 MiB (1%) | 1809451 | | `["homology", "lena1024.dipha"]` | 8.071 s (5%) | 232.492 ms | 902.40 MiB (1%) | 13952723 | | `["homology", "sphere100.pts"]` | 1.602 s (5%) | 13.634 ms | 117.29 MiB (1%) | 1563243 | | `["rips", "dense", "dragon2000.pts"]` | 3.123 s (5%) | 5.019 ms | 292.15 MiB (1%) | 41825 | | `["rips", "dense", "fract-r.dist"]` | 21.108 s (5%) | 311.148 ms | 1.79 GiB (1%) | 98763 | | `["rips", "dense", "o3_1024.pts"]` | 6.140 s (5%) | 32.961 ms | 439.31 MiB (1%) | 2211209 | | `["rips", "sparse", "alpha_3_sphere_3000.spdist"]` | 2.986 s (5%) | 15.222 ms | 167.01 MiB (1%) | 2108391 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 7.788 s (5%) | 31.997 ms | 538.74 MiB (1%) | 3044813 | | `["rips", "sparse", "alpha_5_sphere_1000.spdist"]` | 52.089 s (5%) | 461.335 ms | 3.42 GiB (1%) | 3692686 | | `["rips", "sparse", "dragon2000.pts"]` | 3.324 s (5%) | 33.350 ms | 322.51 MiB (1%) | 37824 | | `["rips", "sparse", "fract-r.dist"]` | 23.286 s (5%) | 314.502 ms | 1.79 GiB (1%) | 97738 | | `["rips", "sparse", "o3_1024.pts"]` | 3.144 s (5%) | 37.227 ms | 337.97 MiB (1%) | 137090 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1031-azure #32~18.04.1-Ubuntu SMP Tue Oct 6 10:03:22 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 10752 s 0 s 1716 s 58689 s 0 s #2 2095 MHz 56280 s 0 s 3312 s 12107 s 0 s Memory: 6.791393280029297 GB (2671.875 MB free) Uptime: 734.0 sec Load Avg: 1.0185546875 0.986328125 0.6484375 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512) ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 2 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian CPU(s): 2 On-line CPU(s) list: 0,1 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 NUMA node(s): 1 Vendor ID: GenuineIntel CPU family: 6 Model: 85 Model name: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz Stepping: 4 CPU MHz: 2095.116 BogoMIPS: 4190.23 Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 32K L1i cache: 32K L2 cache: 1024K L3 cache: 36608K NUMA node0 CPU(s): 0,1 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm mpx avx512f avx512dq rdseed adx smap clflushopt avx512cd avx512bw avx512vl xsaveopt xsavec xsaves md_clear | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz | | Vendor | :Intel | | Architecture | :Skylake | | Model | Family: 0x06, Model: 0x55, Stepping: 0x04, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 1024, 36608) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 46 bits physical | | SIMD | 512 bit = 64 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |
codecov[bot] commented 4 years ago

Codecov Report

Merging #125 (711b613) into master (7dfbe63) will increase coverage by 0.00%. The diff coverage is 100.00%.

Impacted file tree graph

@@           Coverage Diff           @@
##           master     #125   +/-   ##
=======================================
  Coverage   96.07%   96.08%           
=======================================
  Files          20       20           
  Lines        1402     1404    +2     
=======================================
+ Hits         1347     1349    +2     
  Misses         55       55
Impacted Files Coverage Δ
src/base/simplex.jl 96.68% <100.00%> (+0.04%) :arrow_up:

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github-actions[bot] commented 4 years ago
Benchmark result # Judge result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmarks: - Target: 8 Nov 2020 - 23:32 - Baseline: 8 Nov 2020 - 23:37 * Package commits: - Target: 87b571 - Baseline: 7dfbe6 * Julia commits: - Target: 539f3c - Baseline: 539f3c * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |----------------------------------------------------|------------------------------|--------------| | `["rips", "dense", "dragon2000.pts"]` | 0.87 (5%) :white_check_mark: | 1.00 (1%) | | `["rips", "sparse", "alpha_3_sphere_3000.spdist"]` | 0.95 (5%) :white_check_mark: | 1.00 (1%) | | `["rips", "sparse", "dragon2000.pts"]` | 0.93 (5%) :white_check_mark: | 1.00 (1%) | | `["rips", "sparse", "o3_1024.pts"]` | 0.94 (5%) :white_check_mark: | 1.00 (1%) | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ### Target ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1031-azure #32~18.04.1-Ubuntu SMP Tue Oct 6 10:03:22 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 8344 s 0 s 1573 s 72266 s 0 s #2 2294 MHz 34490 s 0 s 2677 s 45019 s 0 s Memory: 6.764892578125 GB (2428.484375 MB free) Uptime: 839.0 sec Load Avg: 1.0 0.814453125 0.44873046875 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, broadwell) ``` ### Baseline ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1031-azure #32~18.04.1-Ubuntu SMP Tue Oct 6 10:03:22 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 15408 s 0 s 1798 s 94211 s 0 s #2 2294 MHz 55866 s 0 s 3395 s 52115 s 0 s Memory: 6.764892578125 GB (2480.9375 MB free) Uptime: 1133.0 sec Load Avg: 1.00732421875 0.9658203125 0.62353515625 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, broadwell) ``` --- # Target result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 8 Nov 2020 - 23:32 * Package commit: 87b571 * Julia commit: 539f3c * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["cubical", "bonsai128.dipha"]` | 32.900 s (5%) | 1.003 s | 4.88 GiB (1%) | 88743484 | | `["cubical", "bonsai64.dipha"]` | 3.128 s (5%) | 77.864 ms | 608.02 MiB (1%) | 9778746 | | `["cubical", "lena1024.dipha"]` | 2.127 s (5%) | 85.334 ms | 625.26 MiB (1%) | 7316704 | | `["cubical", "lena2048.dipha"]` | 9.109 s (5%) | 475.651 ms | 2.37 GiB (1%) | 27943778 | | `["homology", "bonsai64.dipha"]` | 11.739 s (5%) | 284.411 ms | 1.10 GiB (1%) | 19657262 | | `["homology", "klein200.pts"]` | 2.855 s (5%) | 15.532 ms | 107.56 MiB (1%) | 1809332 | | `["homology", "lena1024.dipha"]` | 10.810 s (5%) | 277.480 ms | 902.40 MiB (1%) | 13952725 | | `["homology", "sphere100.pts"]` | 1.871 s (5%) | 16.562 ms | 117.25 MiB (1%) | 1562445 | | `["rips", "dense", "dragon2000.pts"]` | 2.795 s (5%) | 6.980 ms | 292.15 MiB (1%) | 41825 | | `["rips", "dense", "fract-r.dist"]` | 21.514 s (5%) | 341.684 ms | 1.79 GiB (1%) | 98763 | | `["rips", "dense", "o3_1024.pts"]` | 6.121 s (5%) | 37.543 ms | 439.32 MiB (1%) | 2211204 | | `["rips", "sparse", "alpha_3_sphere_3000.spdist"]` | 3.025 s (5%) | 14.803 ms | 167.01 MiB (1%) | 2108391 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 7.511 s (5%) | 40.866 ms | 538.70 MiB (1%) | 3044021 | | `["rips", "sparse", "alpha_5_sphere_1000.spdist"]` | 50.076 s (5%) | 509.581 ms | 3.42 GiB (1%) | 3691904 | | `["rips", "sparse", "dragon2000.pts"]` | 3.229 s (5%) | 41.254 ms | 322.51 MiB (1%) | 37824 | | `["rips", "sparse", "fract-r.dist"]` | 23.784 s (5%) | 350.876 ms | 1.79 GiB (1%) | 97738 | | `["rips", "sparse", "o3_1024.pts"]` | 2.978 s (5%) | 48.438 ms | 337.97 MiB (1%) | 137090 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1031-azure #32~18.04.1-Ubuntu SMP Tue Oct 6 10:03:22 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 8344 s 0 s 1573 s 72266 s 0 s #2 2294 MHz 34490 s 0 s 2677 s 45019 s 0 s Memory: 6.764892578125 GB (2428.484375 MB free) Uptime: 839.0 sec Load Avg: 1.0 0.814453125 0.44873046875 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, broadwell) ``` --- # Baseline result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 8 Nov 2020 - 23:37 * Package commit: 7dfbe6 * Julia commit: 539f3c * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["cubical", "bonsai128.dipha"]` | 33.482 s (5%) | 997.071 ms | 4.88 GiB (1%) | 88743484 | | `["cubical", "bonsai64.dipha"]` | 3.117 s (5%) | 70.115 ms | 608.02 MiB (1%) | 9778746 | | `["cubical", "lena1024.dipha"]` | 2.101 s (5%) | 85.725 ms | 625.26 MiB (1%) | 7316704 | | `["cubical", "lena2048.dipha"]` | 9.244 s (5%) | 470.534 ms | 2.37 GiB (1%) | 27943779 | | `["homology", "bonsai64.dipha"]` | 12.164 s (5%) | 317.948 ms | 1.10 GiB (1%) | 19657266 | | `["homology", "klein200.pts"]` | 2.831 s (5%) | 15.809 ms | 107.57 MiB (1%) | 1809457 | | `["homology", "lena1024.dipha"]` | 10.704 s (5%) | 265.569 ms | 902.40 MiB (1%) | 13952724 | | `["homology", "sphere100.pts"]` | 1.853 s (5%) | 14.700 ms | 117.29 MiB (1%) | 1563235 | | `["rips", "dense", "dragon2000.pts"]` | 3.209 s (5%) | 7.778 ms | 292.15 MiB (1%) | 41825 | | `["rips", "dense", "fract-r.dist"]` | 22.339 s (5%) | 330.314 ms | 1.79 GiB (1%) | 98763 | | `["rips", "dense", "o3_1024.pts"]` | 6.227 s (5%) | 34.870 ms | 439.31 MiB (1%) | 2211204 | | `["rips", "sparse", "alpha_3_sphere_3000.spdist"]` | 3.194 s (5%) | 15.647 ms | 167.01 MiB (1%) | 2108388 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 7.842 s (5%) | 36.048 ms | 538.74 MiB (1%) | 3044810 | | `["rips", "sparse", "alpha_5_sphere_1000.spdist"]` | 51.895 s (5%) | 496.599 ms | 3.42 GiB (1%) | 3692691 | | `["rips", "sparse", "dragon2000.pts"]` | 3.484 s (5%) | 42.926 ms | 322.51 MiB (1%) | 37824 | | `["rips", "sparse", "fract-r.dist"]` | 24.939 s (5%) | 341.932 ms | 1.79 GiB (1%) | 97738 | | `["rips", "sparse", "o3_1024.pts"]` | 3.169 s (5%) | 44.833 ms | 337.97 MiB (1%) | 137090 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1031-azure #32~18.04.1-Ubuntu SMP Tue Oct 6 10:03:22 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 15408 s 0 s 1798 s 94211 s 0 s #2 2294 MHz 55866 s 0 s 3395 s 52115 s 0 s Memory: 6.764892578125 GB (2480.9375 MB free) Uptime: 1133.0 sec Load Avg: 1.00732421875 0.9658203125 0.62353515625 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, broadwell) ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 2 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian CPU(s): 2 On-line CPU(s) list: 0,1 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 NUMA node(s): 1 Vendor ID: GenuineIntel CPU family: 6 Model: 79 Model name: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz Stepping: 1 CPU MHz: 2294.689 BogoMIPS: 4589.37 Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 32K L1i cache: 32K L2 cache: 256K L3 cache: 51200K NUMA node0 CPU(s): 0,1 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm rdseed adx smap xsaveopt md_clear | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz | | Vendor | :Intel | | Architecture | :Broadwell | | Model | Family: 0x06, Model: 0x4f, Stepping: 0x01, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 256, 51200) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 44 bits physical | | SIMD | 256 bit = 32 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |