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mtsch / Ripserer.jl

Flexible and efficient persistent homology computation.
https://mtsch.github.io/Ripserer.jl/dev/
MIT License
66 stars 8 forks source link

Stop testing on Mac #127

Closed mtsch closed 4 years ago

github-actions[bot] commented 4 years ago
Benchmark result # Judge result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmarks: - Target: 10 Nov 2020 - 06:44 - Baseline: 10 Nov 2020 - 06:49 * Package commits: - Target: 90218c - Baseline: a08638 * Julia commits: - Target: 539f3c - Baseline: 539f3c * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |----------------------------------------------------|------------|--------------| ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ### Target ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1031-azure #32~18.04.1-Ubuntu SMP Tue Oct 6 10:03:22 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 8527 s 0 s 1612 s 38883 s 0 s #2 2095 MHz 33620 s 0 s 2708 s 13058 s 0 s Memory: 6.791393280029297 GB (2516.0390625 MB free) Uptime: 510.0 sec Load Avg: 1.01220703125 0.939453125 0.53125 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512) ``` ### Baseline ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1031-azure #32~18.04.1-Ubuntu SMP Tue Oct 6 10:03:22 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 34132 s 0 s 2363 s 39643 s 0 s #2 2095 MHz 34517 s 0 s 2810 s 39098 s 0 s Memory: 6.791393280029297 GB (2475.00390625 MB free) Uptime: 781.0 sec Load Avg: 1.02197265625 1.0 0.67041015625 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512) ``` --- # Target result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 10 Nov 2020 - 6:44 * Package commit: 90218c * Julia commit: 539f3c * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["cubical", "bonsai128.dipha"]` | 33.975 s (5%) | 994.852 ms | 4.88 GiB (1%) | 88743484 | | `["cubical", "bonsai64.dipha"]` | 3.180 s (5%) | 68.885 ms | 608.02 MiB (1%) | 9778746 | | `["cubical", "lena1024.dipha"]` | 2.085 s (5%) | 81.654 ms | 625.26 MiB (1%) | 7316704 | | `["cubical", "lena2048.dipha"]` | 9.099 s (5%) | 455.516 ms | 2.37 GiB (1%) | 27943780 | | `["homology", "bonsai64.dipha"]` | 10.995 s (5%) | 271.271 ms | 1.10 GiB (1%) | 19657251 | | `["homology", "klein200.pts"]` | 2.554 s (5%) | 13.558 ms | 107.56 MiB (1%) | 1809335 | | `["homology", "lena1024.dipha"]` | 8.294 s (5%) | 242.565 ms | 902.40 MiB (1%) | 13952732 | | `["homology", "sphere100.pts"]` | 1.644 s (5%) | 14.151 ms | 117.25 MiB (1%) | 1562443 | | `["rips", "dense", "dragon2000.pts"]` | 2.876 s (5%) | 5.457 ms | 292.15 MiB (1%) | 41825 | | `["rips", "dense", "fract-r.dist"]` | 20.735 s (5%) | 324.012 ms | 1.79 GiB (1%) | 98763 | | `["rips", "dense", "o3_1024.pts"]` | 5.872 s (5%) | 33.112 ms | 439.31 MiB (1%) | 2211202 | | `["rips", "sparse", "alpha_3_sphere_3000.spdist"]` | 2.935 s (5%) | 15.306 ms | 167.01 MiB (1%) | 2108391 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 7.501 s (5%) | 31.816 ms | 538.70 MiB (1%) | 3044019 | | `["rips", "sparse", "alpha_5_sphere_1000.spdist"]` | 51.321 s (5%) | 472.771 ms | 3.42 GiB (1%) | 3691903 | | `["rips", "sparse", "dragon2000.pts"]` | 3.112 s (5%) | 36.560 ms | 322.51 MiB (1%) | 37824 | | `["rips", "sparse", "fract-r.dist"]` | 22.829 s (5%) | 326.096 ms | 1.79 GiB (1%) | 97738 | | `["rips", "sparse", "o3_1024.pts"]` | 2.996 s (5%) | 40.930 ms | 337.97 MiB (1%) | 137090 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1031-azure #32~18.04.1-Ubuntu SMP Tue Oct 6 10:03:22 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 8527 s 0 s 1612 s 38883 s 0 s #2 2095 MHz 33620 s 0 s 2708 s 13058 s 0 s Memory: 6.791393280029297 GB (2516.0390625 MB free) Uptime: 510.0 sec Load Avg: 1.01220703125 0.939453125 0.53125 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512) ``` --- # Baseline result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 10 Nov 2020 - 6:49 * Package commit: a08638 * Julia commit: 539f3c * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["cubical", "bonsai128.dipha"]` | 34.156 s (5%) | 995.310 ms | 4.88 GiB (1%) | 88743484 | | `["cubical", "bonsai64.dipha"]` | 3.184 s (5%) | 67.601 ms | 608.02 MiB (1%) | 9778746 | | `["cubical", "lena1024.dipha"]` | 2.002 s (5%) | 79.840 ms | 625.26 MiB (1%) | 7316704 | | `["cubical", "lena2048.dipha"]` | 8.739 s (5%) | 449.552 ms | 2.37 GiB (1%) | 27943780 | | `["homology", "bonsai64.dipha"]` | 10.914 s (5%) | 269.047 ms | 1.10 GiB (1%) | 19657251 | | `["homology", "klein200.pts"]` | 2.550 s (5%) | 13.233 ms | 107.56 MiB (1%) | 1809335 | | `["homology", "lena1024.dipha"]` | 8.187 s (5%) | 236.340 ms | 902.40 MiB (1%) | 13952732 | | `["homology", "sphere100.pts"]` | 1.636 s (5%) | 13.652 ms | 117.25 MiB (1%) | 1562443 | | `["rips", "dense", "dragon2000.pts"]` | 2.907 s (5%) | 5.426 ms | 292.15 MiB (1%) | 41825 | | `["rips", "dense", "fract-r.dist"]` | 20.829 s (5%) | 315.948 ms | 1.79 GiB (1%) | 98763 | | `["rips", "dense", "o3_1024.pts"]` | 5.908 s (5%) | 33.672 ms | 439.31 MiB (1%) | 2211202 | | `["rips", "sparse", "alpha_3_sphere_3000.spdist"]` | 2.965 s (5%) | 15.707 ms | 167.01 MiB (1%) | 2108391 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 7.646 s (5%) | 32.786 ms | 538.70 MiB (1%) | 3044019 | | `["rips", "sparse", "alpha_5_sphere_1000.spdist"]` | 51.393 s (5%) | 464.638 ms | 3.42 GiB (1%) | 3691903 | | `["rips", "sparse", "dragon2000.pts"]` | 3.104 s (5%) | 33.840 ms | 322.51 MiB (1%) | 37824 | | `["rips", "sparse", "fract-r.dist"]` | 22.943 s (5%) | 322.704 ms | 1.79 GiB (1%) | 97738 | | `["rips", "sparse", "o3_1024.pts"]` | 2.963 s (5%) | 39.544 ms | 337.97 MiB (1%) | 137090 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.5.2 Commit 539f3ce943 (2020-09-23 23:17 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1031-azure #32~18.04.1-Ubuntu SMP Tue Oct 6 10:03:22 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 34132 s 0 s 2363 s 39643 s 0 s #2 2095 MHz 34517 s 0 s 2810 s 39098 s 0 s Memory: 6.791393280029297 GB (2475.00390625 MB free) Uptime: 781.0 sec Load Avg: 1.02197265625 1.0 0.67041015625 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512) ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 2 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian CPU(s): 2 On-line CPU(s) list: 0,1 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 NUMA node(s): 1 Vendor ID: GenuineIntel CPU family: 6 Model: 85 Model name: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz Stepping: 4 CPU MHz: 2095.196 BogoMIPS: 4190.39 Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 32K L1i cache: 32K L2 cache: 1024K L3 cache: 36608K NUMA node0 CPU(s): 0,1 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm mpx avx512f avx512dq rdseed adx smap clflushopt avx512cd avx512bw avx512vl xsaveopt xsavec xsaves md_clear | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz | | Vendor | :Intel | | Architecture | :Skylake | | Model | Family: 0x06, Model: 0x55, Stepping: 0x04, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 1024, 36608) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 46 bits physical | | SIMD | 512 bit = 64 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |
codecov[bot] commented 4 years ago

Codecov Report

Merging #127 (5ca0ea0) into master (a08638d) will decrease coverage by 0.07%. The diff coverage is n/a.

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #127      +/-   ##
==========================================
- Coverage   96.08%   96.01%   -0.08%     
==========================================
  Files          20       20              
  Lines        1404     1404              
==========================================
- Hits         1349     1348       -1     
- Misses         55       56       +1
Impacted Files Coverage Δ
src/base/simplexrecipes.jl 60.00% <0.00%> (-2.00%) :arrow_down:

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