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mtsch / Ripserer.jl

Flexible and efficient persistent homology computation.
https://mtsch.github.io/Ripserer.jl/dev/
MIT License
66 stars 8 forks source link

CompatHelper: bump compat for Compat to 4, (keep existing compat) #155

Closed github-actions[bot] closed 2 years ago

github-actions[bot] commented 2 years ago

This pull request changes the compat entry for the Compat package from 3.10.0 to 3.10.0, 4. This keeps the compat entries for earlier versions.

Note: I have not tested your package with this new compat entry. It is your responsibility to make sure that your package tests pass before you merge this pull request.

github-actions[bot] commented 2 years ago
Benchmark result # Judge result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmarks: - Target: 24 May 2022 - 00:47 - Baseline: 24 May 2022 - 00:50 * Package commits: - Target: eb6491 - Baseline: 953913 * Julia commits: - Target: bf5349 - Baseline: bf5349 * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |----------------------------------------------------|------------------------------|--------------| | `["rips", "sparse", "dragon2000.pts"]` | 0.78 (5%) :white_check_mark: | 1.00 (1%) | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["alpha"]` - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ### Target ``` Julia Version 1.7.2 Commit bf53498635 (2022-02-06 15:21 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.4 LTS uname: Linux 5.13.0-1023-azure #27~20.04.1-Ubuntu SMP Mon Apr 25 22:39:07 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 805 s 2 s 200 s 5208 s 0 s #2 2095 MHz 2902 s 1 s 244 s 3099 s 0 s Memory: 6.783603668212891 GB (2576.0703125 MB free) Uptime: 628.55 sec Load Avg: 1.06 0.97 0.51 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-12.0.1 (ORCJIT, skylake-avx512) ``` ### Baseline ``` Julia Version 1.7.2 Commit bf53498635 (2022-02-06 15:21 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.4 LTS uname: Linux 5.13.0-1023-azure #27~20.04.1-Ubuntu SMP Mon Apr 25 22:39:07 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 2537 s 2 s 248 s 5240 s 0 s #2 2095 MHz 2963 s 1 s 268 s 4817 s 0 s Memory: 6.783603668212891 GB (2521.33984375 MB free) Uptime: 809.72 sec Load Avg: 1.05 1.01 0.61 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-12.0.1 (ORCJIT, skylake-avx512) ``` --- # Target result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 24 May 2022 - 0:47 * Package commit: eb6491 * Julia commit: bf5349 * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["alpha", "klein500.pts"]` | 21.682 s (5%) | 1.240 s | 3.63 GiB (1%) | 42339962 | | `["alpha", "torus10k.pts"]` | 5.400 s (5%) | 150.035 ms | 1.01 GiB (1%) | 11583001 | | `["cubical", "bonsai64.dipha"]` | 6.443 s (5%) | 226.946 ms | 814.06 MiB (1%) | 9815340 | | `["cubical", "lena2048.dipha"]` | 6.411 s (5%) | 330.219 ms | 1.65 GiB (1%) | 5805234 | | `["homology", "klein200.pts"]` | 2.983 s (5%) | 125.113 ms | 403.96 MiB (1%) | 7047883 | | `["homology", "lena1024.dipha"]` | 6.803 s (5%) | 210.102 ms | 929.65 MiB (1%) | 9937459 | | `["homology", "sphere100.pts"]` | 1.306 s (5%) | 13.716 ms | 115.12 MiB (1%) | 1659398 | | `["rips", "dense", "dragon2000.pts"]` | 2.524 s (5%) | 12.835 ms | 272.12 MiB (1%) | 28105 | | `["rips", "dense", "fract-r.dist"]` | 18.382 s (5%) | 409.538 ms | 1.84 GiB (1%) | 18073 | | `["rips", "dense", "o3_1024.pts"]` | 5.639 s (5%) | 80.062 ms | 462.82 MiB (1%) | 3366085 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 8.683 s (5%) | 149.429 ms | 748.31 MiB (1%) | 7362409 | | `["rips", "sparse", "dragon2000.pts"]` | 2.708 s (5%) | 44.194 ms | 301.75 MiB (1%) | 10929 | | `["rips", "sparse", "fract-r.dist"]` | 19.539 s (5%) | 219.755 ms | 1.84 GiB (1%) | 4103 | | `["rips", "sparse", "o3_1024.pts"]` | 2.407 s (5%) | 10.369 ms | 280.07 MiB (1%) | 7693 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["alpha"]` - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.7.2 Commit bf53498635 (2022-02-06 15:21 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.4 LTS uname: Linux 5.13.0-1023-azure #27~20.04.1-Ubuntu SMP Mon Apr 25 22:39:07 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 805 s 2 s 200 s 5208 s 0 s #2 2095 MHz 2902 s 1 s 244 s 3099 s 0 s Memory: 6.783603668212891 GB (2576.0703125 MB free) Uptime: 628.55 sec Load Avg: 1.06 0.97 0.51 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-12.0.1 (ORCJIT, skylake-avx512) ``` --- # Baseline result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 24 May 2022 - 0:50 * Package commit: 953913 * Julia commit: bf5349 * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["alpha", "klein500.pts"]` | 21.366 s (5%) | 1.153 s | 3.63 GiB (1%) | 42339962 | | `["alpha", "torus10k.pts"]` | 5.414 s (5%) | 153.509 ms | 1.01 GiB (1%) | 11583001 | | `["cubical", "bonsai64.dipha"]` | 6.417 s (5%) | 185.506 ms | 814.06 MiB (1%) | 9815339 | | `["cubical", "lena2048.dipha"]` | 6.546 s (5%) | 358.645 ms | 1.65 GiB (1%) | 5805234 | | `["homology", "klein200.pts"]` | 2.961 s (5%) | 129.960 ms | 403.96 MiB (1%) | 7047883 | | `["homology", "lena1024.dipha"]` | 6.868 s (5%) | 209.701 ms | 929.65 MiB (1%) | 9937460 | | `["homology", "sphere100.pts"]` | 1.343 s (5%) | | 115.12 MiB (1%) | 1659398 | | `["rips", "dense", "dragon2000.pts"]` | 2.648 s (5%) | 12.992 ms | 272.12 MiB (1%) | 28105 | | `["rips", "dense", "fract-r.dist"]` | 17.968 s (5%) | 412.425 ms | 1.84 GiB (1%) | 18073 | | `["rips", "dense", "o3_1024.pts"]` | 5.747 s (5%) | 80.123 ms | 462.82 MiB (1%) | 3366085 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 9.120 s (5%) | 154.262 ms | 748.31 MiB (1%) | 7362409 | | `["rips", "sparse", "dragon2000.pts"]` | 3.453 s (5%) | 50.187 ms | 301.75 MiB (1%) | 10929 | | `["rips", "sparse", "fract-r.dist"]` | 19.977 s (5%) | 236.772 ms | 1.84 GiB (1%) | 4103 | | `["rips", "sparse", "o3_1024.pts"]` | 2.466 s (5%) | 10.552 ms | 280.07 MiB (1%) | 7693 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["alpha"]` - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.7.2 Commit bf53498635 (2022-02-06 15:21 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.4 LTS uname: Linux 5.13.0-1023-azure #27~20.04.1-Ubuntu SMP Mon Apr 25 22:39:07 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 2537 s 2 s 248 s 5240 s 0 s #2 2095 MHz 2963 s 1 s 268 s 4817 s 0 s Memory: 6.783603668212891 GB (2521.33984375 MB free) Uptime: 809.72 sec Load Avg: 1.05 1.01 0.61 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-12.0.1 (ORCJIT, skylake-avx512) ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 2 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian Address sizes: 46 bits physical, 48 bits virtual CPU(s): 2 On-line CPU(s) list: 0,1 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 NUMA node(s): 1 Vendor ID: GenuineIntel CPU family: 6 Model: 85 Model name: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz Stepping: 4 CPU MHz: 2095.224 BogoMIPS: 4190.44 Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 64 KiB L1i cache: 64 KiB L2 cache: 2 MiB L3 cache: 35.8 MiB NUMA node0 CPU(s): 0,1 Vulnerability Itlb multihit: KVM: Mitigation: VMX unsupported Vulnerability L1tf: Mitigation; PTE Inversion Vulnerability Mds: Mitigation; Clear CPU buffers; SMT Host state unknown Vulnerability Meltdown: Mitigation; PTI Vulnerability Spec store bypass: Vulnerable Vulnerability Spectre v1: Mitigation; usercopy/swapgs barriers and __user pointer sanitization Vulnerability Spectre v2: Mitigation; Retpolines, STIBP disabled, RSB filling Vulnerability Srbds: Not affected Vulnerability Tsx async abort: Mitigation; Clear CPU buffers; SMT Host state unknown Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm avx512f avx512dq rdseed adx smap clflushopt avx512cd avx512bw avx512vl xsaveopt xsavec xsaves md_clear | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz | | Vendor | :Intel | | Architecture | :Skylake | | Model | Family: 0x06, Model: 0x55, Stepping: 0x04, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading hardware capability detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 1024, 36608) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 46 bits physical | | SIMD | 512 bit = 64 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |