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mtsch
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Ripserer.jl
Flexible and efficient persistent homology computation.
https://mtsch.github.io/Ripserer.jl/dev/
MIT License
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Fix bad link in docs
#157
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mtsch
closed
2 years ago
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commented
2 years ago
Benchmark result
# Judge result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmarks: - Target: 27 Jul 2022 - 08:29 - Baseline: 27 Jul 2022 - 08:33 * Package commits: - Target: 188fe7 - Baseline: 55c2d1 * Julia commits: - Target: 742b9a - Baseline: 742b9a * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |----------------------------------------------------|------------------------------|--------------| | `["cubical", "bonsai64.dipha"]` | 0.89 (5%) :white_check_mark: | 1.00 (1%) | | `["cubical", "lena2048.dipha"]` | 0.91 (5%) :white_check_mark: | 1.00 (1%) | | `["rips", "dense", "fract-r.dist"]` | 0.91 (5%) :white_check_mark: | 1.00 (1%) | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["alpha"]` - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ### Target ``` Julia Version 1.7.3 Commit 742b9abb4d (2022-05-06 12:58 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.4 LTS uname: Linux 5.15.0-1014-azure #17~20.04.1-Ubuntu SMP Thu Jun 23 20:01:51 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 1049 s 1 s 188 s 4156 s 0 s #2 2294 MHz 2883 s 1 s 261 s 2286 s 0 s Memory: 6.780967712402344 GB (2421.21484375 MB free) Uptime: 549.46 sec Load Avg: 1.03 0.88 0.46 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-12.0.1 (ORCJIT, broadwell) ``` ### Baseline ``` Julia Version 1.7.3 Commit 742b9abb4d (2022-05-06 12:58 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.4 LTS uname: Linux 5.15.0-1014-azure #17~20.04.1-Ubuntu SMP Thu Jun 23 20:01:51 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 1085 s 1 s 196 s 6118 s 0 s #2 2294 MHz 4820 s 1 s 312 s 2310 s 0 s Memory: 6.780967712402344 GB (2455.578125 MB free) Uptime: 750.69 sec Load Avg: 1.18 1.0 0.59 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-12.0.1 (ORCJIT, broadwell) ``` --- # Target result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 27 Jul 2022 - 8:29 * Package commit: 188fe7 * Julia commit: 742b9a * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["alpha", "klein500.pts"]` | 24.351 s (5%) | 1.074 s | 3.65 GiB (1%) | 42715793 | | `["alpha", "torus10k.pts"]` | 6.260 s (5%) | 201.881 ms | 1.02 GiB (1%) | 11679323 | | `["cubical", "bonsai64.dipha"]` | 7.314 s (5%) | 253.184 ms | 820.16 MiB (1%) | 9911479 | | `["cubical", "lena2048.dipha"]` | 6.896 s (5%) | 383.556 ms | 1.65 GiB (1%) | 5814228 | | `["homology", "klein200.pts"]` | 3.516 s (5%) | 141.914 ms | 412.06 MiB (1%) | 7169093 | | `["homology", "lena1024.dipha"]` | 7.937 s (5%) | 240.600 ms | 936.61 MiB (1%) | 10040158 | | `["homology", "sphere100.pts"]` | 1.618 s (5%) | 16.220 ms | 115.08 MiB (1%) | 1658770 | | `["rips", "dense", "dragon2000.pts"]` | 2.493 s (5%) | 62.021 ms | 272.12 MiB (1%) | 28105 | | `["rips", "dense", "fract-r.dist"]` | 18.427 s (5%) | 474.942 ms | 1.84 GiB (1%) | 18073 | | `["rips", "dense", "o3_1024.pts"]` | 6.267 s (5%) | 94.906 ms | 464.36 MiB (1%) | 3380860 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 9.525 s (5%) | 197.837 ms | 760.29 MiB (1%) | 7552260 | | `["rips", "sparse", "dragon2000.pts"]` | 3.128 s (5%) | 21.577 ms | 301.75 MiB (1%) | 10929 | | `["rips", "sparse", "fract-r.dist"]` | 22.671 s (5%) | 272.016 ms | 1.84 GiB (1%) | 4103 | | `["rips", "sparse", "o3_1024.pts"]` | 2.509 s (5%) | 14.439 ms | 280.07 MiB (1%) | 7693 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["alpha"]` - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.7.3 Commit 742b9abb4d (2022-05-06 12:58 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.4 LTS uname: Linux 5.15.0-1014-azure #17~20.04.1-Ubuntu SMP Thu Jun 23 20:01:51 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 1049 s 1 s 188 s 4156 s 0 s #2 2294 MHz 2883 s 1 s 261 s 2286 s 0 s Memory: 6.780967712402344 GB (2421.21484375 MB free) Uptime: 549.46 sec Load Avg: 1.03 0.88 0.46 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-12.0.1 (ORCJIT, broadwell) ``` --- # Baseline result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 27 Jul 2022 - 8:33 * Package commit: 55c2d1 * Julia commit: 742b9a * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["alpha", "klein500.pts"]` | 24.071 s (5%) | 1.111 s | 3.65 GiB (1%) | 42715793 | | `["alpha", "torus10k.pts"]` | 6.483 s (5%) | 195.642 ms | 1.02 GiB (1%) | 11679323 | | `["cubical", "bonsai64.dipha"]` | 8.176 s (5%) | 290.864 ms | 820.16 MiB (1%) | 9911479 | | `["cubical", "lena2048.dipha"]` | 7.537 s (5%) | 401.669 ms | 1.65 GiB (1%) | 5814228 | | `["homology", "klein200.pts"]` | 3.553 s (5%) | 144.626 ms | 412.06 MiB (1%) | 7169094 | | `["homology", "lena1024.dipha"]` | 8.245 s (5%) | 238.204 ms | 936.60 MiB (1%) | 10040157 | | `["homology", "sphere100.pts"]` | 1.576 s (5%) | 16.078 ms | 115.08 MiB (1%) | 1658771 | | `["rips", "dense", "dragon2000.pts"]` | 2.615 s (5%) | 62.334 ms | 272.12 MiB (1%) | 28105 | | `["rips", "dense", "fract-r.dist"]` | 20.244 s (5%) | 505.854 ms | 1.84 GiB (1%) | 18073 | | `["rips", "dense", "o3_1024.pts"]` | 6.593 s (5%) | 101.259 ms | 464.36 MiB (1%) | 3380860 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 9.895 s (5%) | 203.074 ms | 760.29 MiB (1%) | 7552259 | | `["rips", "sparse", "dragon2000.pts"]` | 3.100 s (5%) | 21.262 ms | 301.75 MiB (1%) | 10929 | | `["rips", "sparse", "fract-r.dist"]` | 21.678 s (5%) | 273.040 ms | 1.84 GiB (1%) | 4103 | | `["rips", "sparse", "o3_1024.pts"]` | 2.525 s (5%) | 13.232 ms | 280.07 MiB (1%) | 7693 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["alpha"]` - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.7.3 Commit 742b9abb4d (2022-05-06 12:58 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.4 LTS uname: Linux 5.15.0-1014-azure #17~20.04.1-Ubuntu SMP Thu Jun 23 20:01:51 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 1085 s 1 s 196 s 6118 s 0 s #2 2294 MHz 4820 s 1 s 312 s 2310 s 0 s Memory: 6.780967712402344 GB (2455.578125 MB free) Uptime: 750.69 sec Load Avg: 1.18 1.0 0.59 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-12.0.1 (ORCJIT, broadwell) ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 2 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian Address sizes: 46 bits physical, 48 bits virtual CPU(s): 2 On-line CPU(s) list: 0,1 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 NUMA node(s): 1 Vendor ID: GenuineIntel CPU family: 6 Model: 79 Model name: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz Stepping: 1 CPU MHz: 2294.688 BogoMIPS: 4589.37 Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 64 KiB L1i cache: 64 KiB L2 cache: 512 KiB L3 cache: 50 MiB NUMA node0 CPU(s): 0,1 Vulnerability Itlb multihit: KVM: Mitigation: VMX unsupported Vulnerability L1tf: Mitigation; PTE Inversion Vulnerability Mds: Mitigation; Clear CPU buffers; SMT Host state unknown Vulnerability Meltdown: Mitigation; PTI Vulnerability Mmio stale data: Vulnerable: Clear CPU buffers attempted, no microcode; SMT Host state unknown Vulnerability Spec store bypass: Vulnerable Vulnerability Spectre v1: Mitigation; usercopy/swapgs barriers and __user pointer sanitization Vulnerability Spectre v2: Mitigation; Retpolines, STIBP disabled, RSB filling Vulnerability Srbds: Not affected Vulnerability Tsx async abort: Mitigation; Clear CPU buffers; SMT Host state unknown Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm rdseed adx smap xsaveopt md_clear | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz | | Vendor | :Intel | | Architecture | :Broadwell | | Model | Family: 0x06, Model: 0x4f, Stepping: 0x01, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading hardware capability detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 256, 51200) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 46 bits physical | | SIMD | 256 bit = 32 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |
github-actions[bot]
commented
2 years ago
Benchmark result
# Judge result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmarks: - Target: 27 Jul 2022 - 08:43 - Baseline: 27 Jul 2022 - 08:47 * Package commits: - Target: bc4950 - Baseline: 55c2d1 * Julia commits: - Target: 742b9a - Baseline: 742b9a * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |----------------------------------------------------|------------|--------------| ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["alpha"]` - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ### Target ``` Julia Version 1.7.3 Commit 742b9abb4d (2022-05-06 12:58 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.4 LTS uname: Linux 5.15.0-1014-azure #17~20.04.1-Ubuntu SMP Thu Jun 23 20:01:51 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 2492 s 1 s 241 s 5094 s 0 s #2 2095 MHz 1423 s 1 s 241 s 6175 s 0 s Memory: 6.780963897705078 GB (2414.59375 MB free) Uptime: 789.63 sec Load Avg: 1.06 0.92 0.45 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-12.0.1 (ORCJIT, skylake-avx512) ``` ### Baseline ``` Julia Version 1.7.3 Commit 742b9abb4d (2022-05-06 12:58 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.4 LTS uname: Linux 5.15.0-1014-azure #17~20.04.1-Ubuntu SMP Thu Jun 23 20:01:51 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 4393 s 1 s 291 s 5118 s 0 s #2 2095 MHz 1481 s 1 s 270 s 8055 s 0 s Memory: 6.780963897705078 GB (2432.2109375 MB free) Uptime: 987.12 sec Load Avg: 1.01 0.98 0.57 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-12.0.1 (ORCJIT, skylake-avx512) ``` --- # Target result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 27 Jul 2022 - 8:43 * Package commit: bc4950 * Julia commit: 742b9a * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["alpha", "klein500.pts"]` | 23.946 s (5%) | 1.183 s | 3.65 GiB (1%) | 42750578 | | `["alpha", "torus10k.pts"]` | 6.361 s (5%) | 177.119 ms | 1.02 GiB (1%) | 11677266 | | `["cubical", "bonsai64.dipha"]` | 7.562 s (5%) | 247.817 ms | 820.76 MiB (1%) | 9921035 | | `["cubical", "lena2048.dipha"]` | 7.484 s (5%) | 367.779 ms | 1.65 GiB (1%) | 5819373 | | `["homology", "klein200.pts"]` | 3.515 s (5%) | 131.444 ms | 413.23 MiB (1%) | 7187579 | | `["homology", "lena1024.dipha"]` | 8.150 s (5%) | 224.255 ms | 937.41 MiB (1%) | 10053840 | | `["homology", "sphere100.pts"]` | 1.497 s (5%) | 13.953 ms | 115.11 MiB (1%) | 1659435 | | `["rips", "dense", "dragon2000.pts"]` | 2.836 s (5%) | 49.191 ms | 272.12 MiB (1%) | 28105 | | `["rips", "dense", "fract-r.dist"]` | 19.578 s (5%) | 421.367 ms | 1.84 GiB (1%) | 18073 | | `["rips", "dense", "o3_1024.pts"]` | 6.451 s (5%) | 81.801 ms | 465.05 MiB (1%) | 3391218 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 10.035 s (5%) | 174.346 ms | 760.56 MiB (1%) | 7556329 | | `["rips", "sparse", "dragon2000.pts"]` | 3.139 s (5%) | 16.493 ms | 301.75 MiB (1%) | 10929 | | `["rips", "sparse", "fract-r.dist"]` | 21.869 s (5%) | 234.912 ms | 1.84 GiB (1%) | 4103 | | `["rips", "sparse", "o3_1024.pts"]` | 2.696 s (5%) | 11.273 ms | 280.07 MiB (1%) | 7693 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["alpha"]` - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.7.3 Commit 742b9abb4d (2022-05-06 12:58 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.4 LTS uname: Linux 5.15.0-1014-azure #17~20.04.1-Ubuntu SMP Thu Jun 23 20:01:51 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 2492 s 1 s 241 s 5094 s 0 s #2 2095 MHz 1423 s 1 s 241 s 6175 s 0 s Memory: 6.780963897705078 GB (2414.59375 MB free) Uptime: 789.63 sec Load Avg: 1.06 0.92 0.45 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-12.0.1 (ORCJIT, skylake-avx512) ``` --- # Baseline result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 27 Jul 2022 - 8:47 * Package commit: 55c2d1 * Julia commit: 742b9a * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["alpha", "klein500.pts"]` | 23.798 s (5%) | 1.261 s | 3.65 GiB (1%) | 42750579 | | `["alpha", "torus10k.pts"]` | 6.407 s (5%) | 180.394 ms | 1.02 GiB (1%) | 11677266 | | `["cubical", "bonsai64.dipha"]` | 7.613 s (5%) | 248.117 ms | 820.76 MiB (1%) | 9921035 | | `["cubical", "lena2048.dipha"]` | 7.317 s (5%) | 349.561 ms | 1.65 GiB (1%) | 5819373 | | `["homology", "klein200.pts"]` | 3.463 s (5%) | 132.987 ms | 413.23 MiB (1%) | 7187578 | | `["homology", "lena1024.dipha"]` | 7.999 s (5%) | 216.667 ms | 937.41 MiB (1%) | 10053841 | | `["homology", "sphere100.pts"]` | 1.481 s (5%) | 14.147 ms | 115.11 MiB (1%) | 1659436 | | `["rips", "dense", "dragon2000.pts"]` | 2.984 s (5%) | 47.588 ms | 272.12 MiB (1%) | 28105 | | `["rips", "dense", "fract-r.dist"]` | 19.603 s (5%) | 427.448 ms | 1.84 GiB (1%) | 18073 | | `["rips", "dense", "o3_1024.pts"]` | 6.503 s (5%) | 82.685 ms | 465.05 MiB (1%) | 3391218 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 10.111 s (5%) | 172.236 ms | 760.56 MiB (1%) | 7556329 | | `["rips", "sparse", "dragon2000.pts"]` | 3.115 s (5%) | 16.521 ms | 301.75 MiB (1%) | 10929 | | `["rips", "sparse", "fract-r.dist"]` | 21.458 s (5%) | 231.727 ms | 1.84 GiB (1%) | 4103 | | `["rips", "sparse", "o3_1024.pts"]` | 2.729 s (5%) | 10.757 ms | 280.07 MiB (1%) | 7693 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["alpha"]` - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.7.3 Commit 742b9abb4d (2022-05-06 12:58 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.4 LTS uname: Linux 5.15.0-1014-azure #17~20.04.1-Ubuntu SMP Thu Jun 23 20:01:51 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 4393 s 1 s 291 s 5118 s 0 s #2 2095 MHz 1481 s 1 s 270 s 8055 s 0 s Memory: 6.780963897705078 GB (2432.2109375 MB free) Uptime: 987.12 sec Load Avg: 1.01 0.98 0.57 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-12.0.1 (ORCJIT, skylake-avx512) ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 2 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian Address sizes: 46 bits physical, 48 bits virtual CPU(s): 2 On-line CPU(s) list: 0,1 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 NUMA node(s): 1 Vendor ID: GenuineIntel CPU family: 6 Model: 85 Model name: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz Stepping: 4 CPU MHz: 2095.178 BogoMIPS: 4190.35 Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 64 KiB L1i cache: 64 KiB L2 cache: 2 MiB L3 cache: 35.8 MiB NUMA node0 CPU(s): 0,1 Vulnerability Itlb multihit: KVM: Mitigation: VMX unsupported Vulnerability L1tf: Mitigation; PTE Inversion Vulnerability Mds: Mitigation; Clear CPU buffers; SMT Host state unknown Vulnerability Meltdown: Mitigation; PTI Vulnerability Mmio stale data: Vulnerable: Clear CPU buffers attempted, no microcode; SMT Host state unknown Vulnerability Spec store bypass: Vulnerable Vulnerability Spectre v1: Mitigation; usercopy/swapgs barriers and __user pointer sanitization Vulnerability Spectre v2: Mitigation; Retpolines, STIBP disabled, RSB filling Vulnerability Srbds: Not affected Vulnerability Tsx async abort: Mitigation; Clear CPU buffers; SMT Host state unknown Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm mpx avx512f avx512dq rdseed adx smap clflushopt avx512cd avx512bw avx512vl xsaveopt xsavec xsaves md_clear | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz | | Vendor | :Intel | | Architecture | :Skylake | | Model | Family: 0x06, Model: 0x55, Stepping: 0x04, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading hardware capability detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 1024, 36608) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 46 bits physical | | SIMD | 512 bit = 64 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |
coveralls
commented
2 years ago
Pull Request Test Coverage Report for
Build 2745303776
0
of
0
changed or added relevant lines in
0
files are covered.
No unchanged relevant lines lost coverage.
Overall coverage remained the same at
96.558%
Totals
Change from base
Build 2382709188
:
0.0%
Covered Lines:
1627
Relevant Lines:
1685
💛 -
Coveralls
Benchmark result
# Judge result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmarks: - Target: 27 Jul 2022 - 08:29 - Baseline: 27 Jul 2022 - 08:33 * Package commits: - Target: 188fe7 - Baseline: 55c2d1 * Julia commits: - Target: 742b9a - Baseline: 742b9a * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |----------------------------------------------------|------------------------------|--------------| | `["cubical", "bonsai64.dipha"]` | 0.89 (5%) :white_check_mark: | 1.00 (1%) | | `["cubical", "lena2048.dipha"]` | 0.91 (5%) :white_check_mark: | 1.00 (1%) | | `["rips", "dense", "fract-r.dist"]` | 0.91 (5%) :white_check_mark: | 1.00 (1%) | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["alpha"]` - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ### Target ``` Julia Version 1.7.3 Commit 742b9abb4d (2022-05-06 12:58 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.4 LTS uname: Linux 5.15.0-1014-azure #17~20.04.1-Ubuntu SMP Thu Jun 23 20:01:51 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 1049 s 1 s 188 s 4156 s 0 s #2 2294 MHz 2883 s 1 s 261 s 2286 s 0 s Memory: 6.780967712402344 GB (2421.21484375 MB free) Uptime: 549.46 sec Load Avg: 1.03 0.88 0.46 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-12.0.1 (ORCJIT, broadwell) ``` ### Baseline ``` Julia Version 1.7.3 Commit 742b9abb4d (2022-05-06 12:58 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.4 LTS uname: Linux 5.15.0-1014-azure #17~20.04.1-Ubuntu SMP Thu Jun 23 20:01:51 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 1085 s 1 s 196 s 6118 s 0 s #2 2294 MHz 4820 s 1 s 312 s 2310 s 0 s Memory: 6.780967712402344 GB (2455.578125 MB free) Uptime: 750.69 sec Load Avg: 1.18 1.0 0.59 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-12.0.1 (ORCJIT, broadwell) ``` --- # Target result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 27 Jul 2022 - 8:29 * Package commit: 188fe7 * Julia commit: 742b9a * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["alpha", "klein500.pts"]` | 24.351 s (5%) | 1.074 s | 3.65 GiB (1%) | 42715793 | | `["alpha", "torus10k.pts"]` | 6.260 s (5%) | 201.881 ms | 1.02 GiB (1%) | 11679323 | | `["cubical", "bonsai64.dipha"]` | 7.314 s (5%) | 253.184 ms | 820.16 MiB (1%) | 9911479 | | `["cubical", "lena2048.dipha"]` | 6.896 s (5%) | 383.556 ms | 1.65 GiB (1%) | 5814228 | | `["homology", "klein200.pts"]` | 3.516 s (5%) | 141.914 ms | 412.06 MiB (1%) | 7169093 | | `["homology", "lena1024.dipha"]` | 7.937 s (5%) | 240.600 ms | 936.61 MiB (1%) | 10040158 | | `["homology", "sphere100.pts"]` | 1.618 s (5%) | 16.220 ms | 115.08 MiB (1%) | 1658770 | | `["rips", "dense", "dragon2000.pts"]` | 2.493 s (5%) | 62.021 ms | 272.12 MiB (1%) | 28105 | | `["rips", "dense", "fract-r.dist"]` | 18.427 s (5%) | 474.942 ms | 1.84 GiB (1%) | 18073 | | `["rips", "dense", "o3_1024.pts"]` | 6.267 s (5%) | 94.906 ms | 464.36 MiB (1%) | 3380860 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 9.525 s (5%) | 197.837 ms | 760.29 MiB (1%) | 7552260 | | `["rips", "sparse", "dragon2000.pts"]` | 3.128 s (5%) | 21.577 ms | 301.75 MiB (1%) | 10929 | | `["rips", "sparse", "fract-r.dist"]` | 22.671 s (5%) | 272.016 ms | 1.84 GiB (1%) | 4103 | | `["rips", "sparse", "o3_1024.pts"]` | 2.509 s (5%) | 14.439 ms | 280.07 MiB (1%) | 7693 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["alpha"]` - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.7.3 Commit 742b9abb4d (2022-05-06 12:58 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.4 LTS uname: Linux 5.15.0-1014-azure #17~20.04.1-Ubuntu SMP Thu Jun 23 20:01:51 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 1049 s 1 s 188 s 4156 s 0 s #2 2294 MHz 2883 s 1 s 261 s 2286 s 0 s Memory: 6.780967712402344 GB (2421.21484375 MB free) Uptime: 549.46 sec Load Avg: 1.03 0.88 0.46 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-12.0.1 (ORCJIT, broadwell) ``` --- # Baseline result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 27 Jul 2022 - 8:33 * Package commit: 55c2d1 * Julia commit: 742b9a * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|----------------:|------------:| | `["alpha", "klein500.pts"]` | 24.071 s (5%) | 1.111 s | 3.65 GiB (1%) | 42715793 | | `["alpha", "torus10k.pts"]` | 6.483 s (5%) | 195.642 ms | 1.02 GiB (1%) | 11679323 | | `["cubical", "bonsai64.dipha"]` | 8.176 s (5%) | 290.864 ms | 820.16 MiB (1%) | 9911479 | | `["cubical", "lena2048.dipha"]` | 7.537 s (5%) | 401.669 ms | 1.65 GiB (1%) | 5814228 | | `["homology", "klein200.pts"]` | 3.553 s (5%) | 144.626 ms | 412.06 MiB (1%) | 7169094 | | `["homology", "lena1024.dipha"]` | 8.245 s (5%) | 238.204 ms | 936.60 MiB (1%) | 10040157 | | `["homology", "sphere100.pts"]` | 1.576 s (5%) | 16.078 ms | 115.08 MiB (1%) | 1658771 | | `["rips", "dense", "dragon2000.pts"]` | 2.615 s (5%) | 62.334 ms | 272.12 MiB (1%) | 28105 | | `["rips", "dense", "fract-r.dist"]` | 20.244 s (5%) | 505.854 ms | 1.84 GiB (1%) | 18073 | | `["rips", "dense", "o3_1024.pts"]` | 6.593 s (5%) | 101.259 ms | 464.36 MiB (1%) | 3380860 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 9.895 s (5%) | 203.074 ms | 760.29 MiB (1%) | 7552259 | | `["rips", "sparse", "dragon2000.pts"]` | 3.100 s (5%) | 21.262 ms | 301.75 MiB (1%) | 10929 | | `["rips", "sparse", "fract-r.dist"]` | 21.678 s (5%) | 273.040 ms | 1.84 GiB (1%) | 4103 | | `["rips", "sparse", "o3_1024.pts"]` | 2.525 s (5%) | 13.232 ms | 280.07 MiB (1%) | 7693 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["alpha"]` - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.7.3 Commit 742b9abb4d (2022-05-06 12:58 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.4 LTS uname: Linux 5.15.0-1014-azure #17~20.04.1-Ubuntu SMP Thu Jun 23 20:01:51 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 1085 s 1 s 196 s 6118 s 0 s #2 2294 MHz 4820 s 1 s 312 s 2310 s 0 s Memory: 6.780967712402344 GB (2455.578125 MB free) Uptime: 750.69 sec Load Avg: 1.18 1.0 0.59 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-12.0.1 (ORCJIT, broadwell) ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 2 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian Address sizes: 46 bits physical, 48 bits virtual CPU(s): 2 On-line CPU(s) list: 0,1 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 NUMA node(s): 1 Vendor ID: GenuineIntel CPU family: 6 Model: 79 Model name: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz Stepping: 1 CPU MHz: 2294.688 BogoMIPS: 4589.37 Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 64 KiB L1i cache: 64 KiB L2 cache: 512 KiB L3 cache: 50 MiB NUMA node0 CPU(s): 0,1 Vulnerability Itlb multihit: KVM: Mitigation: VMX unsupported Vulnerability L1tf: Mitigation; PTE Inversion Vulnerability Mds: Mitigation; Clear CPU buffers; SMT Host state unknown Vulnerability Meltdown: Mitigation; PTI Vulnerability Mmio stale data: Vulnerable: Clear CPU buffers attempted, no microcode; SMT Host state unknown Vulnerability Spec store bypass: Vulnerable Vulnerability Spectre v1: Mitigation; usercopy/swapgs barriers and __user pointer sanitization Vulnerability Spectre v2: Mitigation; Retpolines, STIBP disabled, RSB filling Vulnerability Srbds: Not affected Vulnerability Tsx async abort: Mitigation; Clear CPU buffers; SMT Host state unknown Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm rdseed adx smap xsaveopt md_clear | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz | | Vendor | :Intel | | Architecture | :Broadwell | | Model | Family: 0x06, Model: 0x4f, Stepping: 0x01, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading hardware capability detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 256, 51200) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 46 bits physical | | SIMD | 256 bit = 32 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |