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mtsch / Ripserer.jl

Flexible and efficient persistent homology computation.
https://mtsch.github.io/Ripserer.jl/dev/
MIT License
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Fix promote rules for `Mod` #162

Closed mtsch closed 1 year ago

mtsch commented 1 year ago

Fixes #161

github-actions[bot] commented 1 year ago
Benchmark result # Judge result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmarks: - Target: 28 Dec 2022 - 19:26 - Baseline: 28 Dec 2022 - 19:29 * Package commits: - Target: c39307 - Baseline: be521a * Julia commits: - Target: 00177e - Baseline: 00177e * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |----------------------------------------------------|------------|--------------| ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["alpha"]` - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ### Target ``` Julia Version 1.8.4 Commit 00177ebc4fc (2022-12-23 21:32 UTC) Platform Info: OS: Linux (x86_64-linux-gnu) Ubuntu 22.04.1 LTS uname: Linux 5.15.0-1024-azure #30-Ubuntu SMP Wed Nov 16 23:37:59 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8370C CPU @ 2.80GHz: speed user nice sys idle irq #1 2793 MHz 838 s 0 s 147 s 4706 s 0 s #2 2793 MHz 2564 s 0 s 215 s 2936 s 0 s Memory: 6.781219482421875 GB (4658.609375 MB free) Uptime: 577.24 sec Load Avg: 1.05 0.86 0.43 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-13.0.1 (ORCJIT, icelake-server) Threads: 1 on 2 virtual cores ``` ### Baseline ``` Julia Version 1.8.4 Commit 00177ebc4fc (2022-12-23 21:32 UTC) Platform Info: OS: Linux (x86_64-linux-gnu) Ubuntu 22.04.1 LTS uname: Linux 5.15.0-1024-azure #30-Ubuntu SMP Wed Nov 16 23:37:59 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8370C CPU @ 2.80GHz: speed user nice sys idle irq #1 2793 MHz 2427 s 0 s 183 s 4759 s 0 s #2 2793 MHz 2627 s 0 s 222 s 4536 s 0 s Memory: 6.781219482421875 GB (4710.53125 MB free) Uptime: 744.97 sec Load Avg: 1.0 0.93 0.53 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-13.0.1 (ORCJIT, icelake-server) Threads: 1 on 2 virtual cores ``` --- # Target result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 28 Dec 2022 - 19:26 * Package commit: c39307 * Julia commit: 00177e * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|-----------------:|------------:| | `["alpha", "klein500.pts"]` | 18.333 s (5%) | 757.266 ms | 3.50 GiB (1%) | 40706218 | | `["alpha", "torus10k.pts"]` | 5.111 s (5%) | 133.889 ms | 1007.19 MiB (1%) | 11160828 | | `["cubical", "bonsai64.dipha"]` | 6.027 s (5%) | 118.306 ms | 747.28 MiB (1%) | 8973127 | | `["cubical", "lena2048.dipha"]` | 6.121 s (5%) | 314.293 ms | 1.63 GiB (1%) | 5572303 | | `["homology", "klein200.pts"]` | 2.625 s (5%) | 64.918 ms | 349.22 MiB (1%) | 6415774 | | `["homology", "lena1024.dipha"]` | 6.354 s (5%) | 103.529 ms | 851.35 MiB (1%) | 8893392 | | `["homology", "sphere100.pts"]` | 1.230 s (5%) | 15.594 ms | 107.59 MiB (1%) | 1591505 | | `["rips", "dense", "dragon2000.pts"]` | 2.478 s (5%) | 8.824 ms | 271.30 MiB (1%) | 11411 | | `["rips", "dense", "fract-r.dist"]` | 16.434 s (5%) | 227.235 ms | 1.84 GiB (1%) | 5108 | | `["rips", "dense", "o3_1024.pts"]` | 4.628 s (5%) | 55.218 ms | 422.95 MiB (1%) | 2820680 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 8.267 s (5%) | 80.435 ms | 694.92 MiB (1%) | 6644756 | | `["rips", "sparse", "dragon2000.pts"]` | 2.657 s (5%) | 8.168 ms | 301.65 MiB (1%) | 7409 | | `["rips", "sparse", "fract-r.dist"]` | 18.031 s (5%) | 217.416 ms | 1.84 GiB (1%) | 4082 | | `["rips", "sparse", "o3_1024.pts"]` | 2.354 s (5%) | 7.584 ms | 279.93 MiB (1%) | 4138 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["alpha"]` - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.8.4 Commit 00177ebc4fc (2022-12-23 21:32 UTC) Platform Info: OS: Linux (x86_64-linux-gnu) Ubuntu 22.04.1 LTS uname: Linux 5.15.0-1024-azure #30-Ubuntu SMP Wed Nov 16 23:37:59 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8370C CPU @ 2.80GHz: speed user nice sys idle irq #1 2793 MHz 838 s 0 s 147 s 4706 s 0 s #2 2793 MHz 2564 s 0 s 215 s 2936 s 0 s Memory: 6.781219482421875 GB (4658.609375 MB free) Uptime: 577.24 sec Load Avg: 1.05 0.86 0.43 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-13.0.1 (ORCJIT, icelake-server) Threads: 1 on 2 virtual cores ``` --- # Baseline result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 28 Dec 2022 - 19:29 * Package commit: be521a * Julia commit: 00177e * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|-----------------:|------------:| | `["alpha", "klein500.pts"]` | 17.769 s (5%) | 755.473 ms | 3.50 GiB (1%) | 40688231 | | `["alpha", "torus10k.pts"]` | 5.072 s (5%) | 138.888 ms | 1006.52 MiB (1%) | 11152319 | | `["cubical", "bonsai64.dipha"]` | 5.983 s (5%) | 118.391 ms | 746.60 MiB (1%) | 8964960 | | `["cubical", "lena2048.dipha"]` | 6.191 s (5%) | 305.463 ms | 1.63 GiB (1%) | 5572015 | | `["homology", "klein200.pts"]` | 2.596 s (5%) | 64.653 ms | 348.04 MiB (1%) | 6402525 | | `["homology", "lena1024.dipha"]` | 6.346 s (5%) | 125.404 ms | 850.63 MiB (1%) | 8884317 | | `["homology", "sphere100.pts"]` | 1.235 s (5%) | | 107.61 MiB (1%) | 1591509 | | `["rips", "dense", "dragon2000.pts"]` | 2.470 s (5%) | 8.573 ms | 271.30 MiB (1%) | 11411 | | `["rips", "dense", "fract-r.dist"]` | 16.290 s (5%) | 215.886 ms | 1.84 GiB (1%) | 5108 | | `["rips", "dense", "o3_1024.pts"]` | 4.651 s (5%) | 54.953 ms | 422.86 MiB (1%) | 2820082 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 8.238 s (5%) | 74.081 ms | 694.09 MiB (1%) | 6635027 | | `["rips", "sparse", "dragon2000.pts"]` | 2.664 s (5%) | 7.937 ms | 301.65 MiB (1%) | 7409 | | `["rips", "sparse", "fract-r.dist"]` | 17.825 s (5%) | 214.243 ms | 1.84 GiB (1%) | 4082 | | `["rips", "sparse", "o3_1024.pts"]` | 2.327 s (5%) | 7.370 ms | 279.93 MiB (1%) | 4138 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["alpha"]` - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.8.4 Commit 00177ebc4fc (2022-12-23 21:32 UTC) Platform Info: OS: Linux (x86_64-linux-gnu) Ubuntu 22.04.1 LTS uname: Linux 5.15.0-1024-azure #30-Ubuntu SMP Wed Nov 16 23:37:59 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8370C CPU @ 2.80GHz: speed user nice sys idle irq #1 2793 MHz 2427 s 0 s 183 s 4759 s 0 s #2 2793 MHz 2627 s 0 s 222 s 4536 s 0 s Memory: 6.781219482421875 GB (4710.53125 MB free) Uptime: 744.97 sec Load Avg: 1.0 0.93 0.53 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-13.0.1 (ORCJIT, icelake-server) Threads: 1 on 2 virtual cores ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 1 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Address sizes: 46 bits physical, 48 bits virtual Byte Order: Little Endian CPU(s): 2 On-line CPU(s) list: 0,1 Vendor ID: GenuineIntel Model name: Intel(R) Xeon(R) Platinum 8370C CPU @ 2.80GHz CPU family: 6 Model: 106 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 Stepping: 6 BogoMIPS: 5586.87 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm avx512f avx512dq rdseed adx smap clflushopt avx512cd avx512bw avx512vl xsaveopt xsavec xsaves md_clear Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 96 KiB (2 instances) L1i cache: 64 KiB (2 instances) L2 cache: 2.5 MiB (2 instances) L3 cache: 48 MiB (1 instance) NUMA node(s): 1 NUMA node0 CPU(s): 0,1 Vulnerability Itlb multihit: KVM: Mitigation: VMX unsupported Vulnerability L1tf: Mitigation; PTE Inversion Vulnerability Mds: Mitigation; Clear CPU buffers; SMT Host state unknown Vulnerability Meltdown: Mitigation; PTI Vulnerability Mmio stale data: Vulnerable: Clear CPU buffers attempted, no microcode; SMT Host state unknown Vulnerability Retbleed: Not affected Vulnerability Spec store bypass: Vulnerable Vulnerability Spectre v1: Mitigation; usercopy/swapgs barriers and __user pointer sanitization Vulnerability Spectre v2: Mitigation; Retpolines, STIBP disabled, RSB filling, PBRSB-eIBRS Not affected Vulnerability Srbds: Not affected Vulnerability Tsx async abort: Mitigation; Clear CPU buffers; SMT Host state unknown | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) Platinum 8370C CPU @ 2.80GHz | | Vendor | :Intel | | Architecture | :UnknownIntel | | Model | Family: 0x06, Model: 0x6a, Stepping: 0x06, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading hardware capability detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (48, 1280, 49152) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 46 bits physical | | SIMD | 512 bit = 64 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |
github-actions[bot] commented 1 year ago
Benchmark result # Judge result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmarks: - Target: 28 Dec 2022 - 20:22 - Baseline: 28 Dec 2022 - 20:26 * Package commits: - Target: 886e86 - Baseline: be521a * Julia commits: - Target: 00177e - Baseline: 00177e * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |----------------------------------------------------|------------|--------------| ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["alpha"]` - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ### Target ``` Julia Version 1.8.4 Commit 00177ebc4fc (2022-12-23 21:32 UTC) Platform Info: OS: Linux (x86_64-linux-gnu) Ubuntu 22.04.1 LTS uname: Linux 5.15.0-1024-azure #30-Ubuntu SMP Wed Nov 16 23:37:59 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8272CL CPU @ 2.60GHz: speed user nice sys idle irq #1 2593 MHz 804 s 0 s 178 s 4911 s 0 s #2 2593 MHz 2744 s 0 s 224 s 2932 s 0 s Memory: 6.781219482421875 GB (4704.265625 MB free) Uptime: 598.32 sec Load Avg: 1.04 0.95 0.52 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-13.0.1 (ORCJIT, skylake-avx512) Threads: 1 on 2 virtual cores ``` ### Baseline ``` Julia Version 1.8.4 Commit 00177ebc4fc (2022-12-23 21:32 UTC) Platform Info: OS: Linux (x86_64-linux-gnu) Ubuntu 22.04.1 LTS uname: Linux 5.15.0-1024-azure #30-Ubuntu SMP Wed Nov 16 23:37:59 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8272CL CPU @ 2.60GHz: speed user nice sys idle irq #1 2593 MHz 864 s 0 s 186 s 6660 s 0 s #2 2593 MHz 4464 s 0 s 271 s 2986 s 0 s Memory: 6.781219482421875 GB (4693.59375 MB free) Uptime: 780.54 sec Load Avg: 1.06 1.0 0.61 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-13.0.1 (ORCJIT, skylake-avx512) Threads: 1 on 2 virtual cores ``` --- # Target result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 28 Dec 2022 - 20:22 * Package commit: 886e86 * Julia commit: 00177e * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|-----------------:|------------:| | `["alpha", "klein500.pts"]` | 20.075 s (5%) | 932.138 ms | 3.50 GiB (1%) | 40737767 | | `["alpha", "torus10k.pts"]` | 5.500 s (5%) | 170.980 ms | 1006.35 MiB (1%) | 11146488 | | `["cubical", "bonsai64.dipha"]` | 6.313 s (5%) | 147.968 ms | 748.75 MiB (1%) | 8982991 | | `["cubical", "lena2048.dipha"]` | 6.501 s (5%) | 355.089 ms | 1.63 GiB (1%) | 5581088 | | `["homology", "klein200.pts"]` | 2.837 s (5%) | 82.344 ms | 349.70 MiB (1%) | 6418542 | | `["homology", "lena1024.dipha"]` | 6.811 s (5%) | 160.253 ms | 852.16 MiB (1%) | 8899125 | | `["homology", "sphere100.pts"]` | 1.325 s (5%) | 20.211 ms | 107.60 MiB (1%) | 1591564 | | `["rips", "dense", "dragon2000.pts"]` | 2.548 s (5%) | 12.126 ms | 271.30 MiB (1%) | 11411 | | `["rips", "dense", "fract-r.dist"]` | 17.610 s (5%) | 258.200 ms | 1.84 GiB (1%) | 5108 | | `["rips", "dense", "o3_1024.pts"]` | 5.132 s (5%) | 69.255 ms | 424.62 MiB (1%) | 2839825 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 8.628 s (5%) | 93.650 ms | 695.03 MiB (1%) | 6641144 | | `["rips", "sparse", "dragon2000.pts"]` | 2.757 s (5%) | 11.134 ms | 301.65 MiB (1%) | 7409 | | `["rips", "sparse", "fract-r.dist"]` | 19.699 s (5%) | 255.671 ms | 1.84 GiB (1%) | 4082 | | `["rips", "sparse", "o3_1024.pts"]` | 2.551 s (5%) | 10.062 ms | 279.93 MiB (1%) | 4138 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["alpha"]` - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.8.4 Commit 00177ebc4fc (2022-12-23 21:32 UTC) Platform Info: OS: Linux (x86_64-linux-gnu) Ubuntu 22.04.1 LTS uname: Linux 5.15.0-1024-azure #30-Ubuntu SMP Wed Nov 16 23:37:59 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8272CL CPU @ 2.60GHz: speed user nice sys idle irq #1 2593 MHz 804 s 0 s 178 s 4911 s 0 s #2 2593 MHz 2744 s 0 s 224 s 2932 s 0 s Memory: 6.781219482421875 GB (4704.265625 MB free) Uptime: 598.32 sec Load Avg: 1.04 0.95 0.52 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-13.0.1 (ORCJIT, skylake-avx512) Threads: 1 on 2 virtual cores ``` --- # Baseline result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 28 Dec 2022 - 20:26 * Package commit: be521a * Julia commit: 00177e * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|-----------------:|------------:| | `["alpha", "klein500.pts"]` | 19.584 s (5%) | 916.907 ms | 3.50 GiB (1%) | 40751926 | | `["alpha", "torus10k.pts"]` | 5.424 s (5%) | 164.630 ms | 1006.96 MiB (1%) | 11154667 | | `["cubical", "bonsai64.dipha"]` | 6.369 s (5%) | 143.357 ms | 749.08 MiB (1%) | 8990875 | | `["cubical", "lena2048.dipha"]` | 6.604 s (5%) | 360.560 ms | 1.63 GiB (1%) | 5581130 | | `["homology", "klein200.pts"]` | 2.797 s (5%) | 54.906 ms | 350.54 MiB (1%) | 6431034 | | `["homology", "lena1024.dipha"]` | 6.791 s (5%) | 133.705 ms | 852.84 MiB (1%) | 8907702 | | `["homology", "sphere100.pts"]` | 1.328 s (5%) | 19.710 ms | 107.60 MiB (1%) | 1591562 | | `["rips", "dense", "dragon2000.pts"]` | 2.515 s (5%) | 11.816 ms | 271.30 MiB (1%) | 11411 | | `["rips", "dense", "fract-r.dist"]` | 17.378 s (5%) | 250.217 ms | 1.84 GiB (1%) | 5108 | | `["rips", "dense", "o3_1024.pts"]` | 5.104 s (5%) | 66.083 ms | 424.63 MiB (1%) | 2840007 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 8.592 s (5%) | 98.762 ms | 695.65 MiB (1%) | 6650331 | | `["rips", "sparse", "dragon2000.pts"]` | 2.780 s (5%) | 11.010 ms | 301.65 MiB (1%) | 7409 | | `["rips", "sparse", "fract-r.dist"]` | 19.712 s (5%) | 260.721 ms | 1.84 GiB (1%) | 4082 | | `["rips", "sparse", "o3_1024.pts"]` | 2.543 s (5%) | 9.942 ms | 279.93 MiB (1%) | 4138 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["alpha"]` - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.8.4 Commit 00177ebc4fc (2022-12-23 21:32 UTC) Platform Info: OS: Linux (x86_64-linux-gnu) Ubuntu 22.04.1 LTS uname: Linux 5.15.0-1024-azure #30-Ubuntu SMP Wed Nov 16 23:37:59 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8272CL CPU @ 2.60GHz: speed user nice sys idle irq #1 2593 MHz 864 s 0 s 186 s 6660 s 0 s #2 2593 MHz 4464 s 0 s 271 s 2986 s 0 s Memory: 6.781219482421875 GB (4693.59375 MB free) Uptime: 780.54 sec Load Avg: 1.06 1.0 0.61 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-13.0.1 (ORCJIT, skylake-avx512) Threads: 1 on 2 virtual cores ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 1 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Address sizes: 46 bits physical, 48 bits virtual Byte Order: Little Endian CPU(s): 2 On-line CPU(s) list: 0,1 Vendor ID: GenuineIntel Model name: Intel(R) Xeon(R) Platinum 8272CL CPU @ 2.60GHz CPU family: 6 Model: 85 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 Stepping: 7 BogoMIPS: 5187.81 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm avx512f avx512dq rdseed adx smap clflushopt avx512cd avx512bw avx512vl xsaveopt xsavec xsaves md_clear Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 64 KiB (2 instances) L1i cache: 64 KiB (2 instances) L2 cache: 2 MiB (2 instances) L3 cache: 35.8 MiB (1 instance) NUMA node(s): 1 NUMA node0 CPU(s): 0,1 Vulnerability Itlb multihit: KVM: Mitigation: VMX unsupported Vulnerability L1tf: Mitigation; PTE Inversion Vulnerability Mds: Mitigation; Clear CPU buffers; SMT Host state unknown Vulnerability Meltdown: Mitigation; PTI Vulnerability Mmio stale data: Vulnerable: Clear CPU buffers attempted, no microcode; SMT Host state unknown Vulnerability Retbleed: Vulnerable Vulnerability Spec store bypass: Vulnerable Vulnerability Spectre v1: Mitigation; usercopy/swapgs barriers and __user pointer sanitization Vulnerability Spectre v2: Mitigation; Retpolines, STIBP disabled, RSB filling, PBRSB-eIBRS Not affected Vulnerability Srbds: Not affected Vulnerability Tsx async abort: Mitigation; Clear CPU buffers; SMT Host state unknown | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) Platinum 8272CL CPU @ 2.60GHz | | Vendor | :Intel | | Architecture | :Skylake | | Model | Family: 0x06, Model: 0x55, Stepping: 0x07, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading hardware capability detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 1024, 36608) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 46 bits physical | | SIMD | 512 bit = 64 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |
github-actions[bot] commented 1 year ago
Benchmark result # Judge result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmarks: - Target: 28 Dec 2022 - 20:28 - Baseline: 28 Dec 2022 - 20:32 * Package commits: - Target: 94ba9e - Baseline: be521a * Julia commits: - Target: 00177e - Baseline: 00177e * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |----------------------------------------------------|---------------|--------------| | `["rips", "dense", "fract-r.dist"]` | 1.06 (5%) :x: | 1.00 (1%) | | `["rips", "sparse", "dragon2000.pts"]` | 1.07 (5%) :x: | 1.00 (1%) | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["alpha"]` - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ### Target ``` Julia Version 1.8.4 Commit 00177ebc4fc (2022-12-23 21:32 UTC) Platform Info: OS: Linux (x86_64-linux-gnu) Ubuntu 22.04.1 LTS uname: Linux 5.15.0-1024-azure #30-Ubuntu SMP Wed Nov 16 23:37:59 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 3391 s 0 s 284 s 3691 s 0 s #2 2294 MHz 1456 s 0 s 275 s 5585 s 0 s Memory: 6.781219482421875 GB (4663.46484375 MB free) Uptime: 745.68 sec Load Avg: 1.02 1.03 0.62 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-13.0.1 (ORCJIT, broadwell) Threads: 1 on 2 virtual cores ``` ### Baseline ``` Julia Version 1.8.4 Commit 00177ebc4fc (2022-12-23 21:32 UTC) Platform Info: OS: Linux (x86_64-linux-gnu) Ubuntu 22.04.1 LTS uname: Linux 5.15.0-1024-azure #30-Ubuntu SMP Wed Nov 16 23:37:59 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 3450 s 0 s 292 s 6019 s 0 s #2 2294 MHz 3755 s 0 s 335 s 5629 s 0 s Memory: 6.781219482421875 GB (4612.109375 MB free) Uptime: 986.12 sec Load Avg: 1.01 1.03 0.73 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-13.0.1 (ORCJIT, broadwell) Threads: 1 on 2 virtual cores ``` --- # Target result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 28 Dec 2022 - 20:28 * Package commit: 94ba9e * Julia commit: 00177e * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|-----------------:|------------:| | `["alpha", "klein500.pts"]` | 27.034 s (5%) | 1.150 s | 3.50 GiB (1%) | 40776037 | | `["alpha", "torus10k.pts"]` | 7.212 s (5%) | 220.534 ms | 1007.92 MiB (1%) | 11166966 | | `["cubical", "bonsai64.dipha"]` | 8.528 s (5%) | 193.032 ms | 750.86 MiB (1%) | 9010872 | | `["cubical", "lena2048.dipha"]` | 8.142 s (5%) | 461.675 ms | 1.63 GiB (1%) | 5585722 | | `["homology", "klein200.pts"]` | 3.909 s (5%) | 103.271 ms | 351.84 MiB (1%) | 6445172 | | `["homology", "lena1024.dipha"]` | 9.234 s (5%) | 195.380 ms | 854.36 MiB (1%) | 8925211 | | `["homology", "sphere100.pts"]` | 1.765 s (5%) | 24.536 ms | 107.60 MiB (1%) | 1591701 | | `["rips", "dense", "dragon2000.pts"]` | 3.256 s (5%) | 16.295 ms | 271.30 MiB (1%) | 11411 | | `["rips", "dense", "fract-r.dist"]` | 23.863 s (5%) | 380.721 ms | 1.84 GiB (1%) | 5108 | | `["rips", "dense", "o3_1024.pts"]` | 6.745 s (5%) | 89.283 ms | 425.67 MiB (1%) | 2847599 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 11.409 s (5%) | 129.102 ms | 696.87 MiB (1%) | 6664552 | | `["rips", "sparse", "dragon2000.pts"]` | 3.817 s (5%) | 15.274 ms | 301.65 MiB (1%) | 7409 | | `["rips", "sparse", "fract-r.dist"]` | 26.145 s (5%) | 320.141 ms | 1.84 GiB (1%) | 4082 | | `["rips", "sparse", "o3_1024.pts"]` | 3.281 s (5%) | 12.788 ms | 279.93 MiB (1%) | 4138 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["alpha"]` - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.8.4 Commit 00177ebc4fc (2022-12-23 21:32 UTC) Platform Info: OS: Linux (x86_64-linux-gnu) Ubuntu 22.04.1 LTS uname: Linux 5.15.0-1024-azure #30-Ubuntu SMP Wed Nov 16 23:37:59 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 3391 s 0 s 284 s 3691 s 0 s #2 2294 MHz 1456 s 0 s 275 s 5585 s 0 s Memory: 6.781219482421875 GB (4663.46484375 MB free) Uptime: 745.68 sec Load Avg: 1.02 1.03 0.62 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-13.0.1 (ORCJIT, broadwell) Threads: 1 on 2 virtual cores ``` --- # Baseline result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 28 Dec 2022 - 20:32 * Package commit: be521a * Julia commit: 00177e * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|-----------------:|------------:| | `["alpha", "klein500.pts"]` | 26.241 s (5%) | 1.103 s | 3.50 GiB (1%) | 40768693 | | `["alpha", "torus10k.pts"]` | 7.270 s (5%) | 219.917 ms | 1007.39 MiB (1%) | 11157738 | | `["cubical", "bonsai64.dipha"]` | 8.471 s (5%) | 179.068 ms | 750.22 MiB (1%) | 9000773 | | `["cubical", "lena2048.dipha"]` | 8.065 s (5%) | 446.503 ms | 1.63 GiB (1%) | 5585549 | | `["homology", "klein200.pts"]` | 3.872 s (5%) | 102.882 ms | 351.36 MiB (1%) | 6436424 | | `["homology", "lena1024.dipha"]` | 8.850 s (5%) | 215.473 ms | 853.79 MiB (1%) | 8916018 | | `["homology", "sphere100.pts"]` | 1.789 s (5%) | 24.078 ms | 107.60 MiB (1%) | 1591699 | | `["rips", "dense", "dragon2000.pts"]` | 3.172 s (5%) | 17.625 ms | 271.30 MiB (1%) | 11411 | | `["rips", "dense", "fract-r.dist"]` | 22.568 s (5%) | 323.322 ms | 1.84 GiB (1%) | 5108 | | `["rips", "dense", "o3_1024.pts"]` | 6.537 s (5%) | 88.573 ms | 425.40 MiB (1%) | 2847381 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 11.211 s (5%) | 130.679 ms | 696.36 MiB (1%) | 6656386 | | `["rips", "sparse", "dragon2000.pts"]` | 3.583 s (5%) | 14.277 ms | 301.65 MiB (1%) | 7409 | | `["rips", "sparse", "fract-r.dist"]` | 26.511 s (5%) | 351.233 ms | 1.84 GiB (1%) | 4082 | | `["rips", "sparse", "o3_1024.pts"]` | 3.232 s (5%) | 11.978 ms | 279.93 MiB (1%) | 4138 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["alpha"]` - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.8.4 Commit 00177ebc4fc (2022-12-23 21:32 UTC) Platform Info: OS: Linux (x86_64-linux-gnu) Ubuntu 22.04.1 LTS uname: Linux 5.15.0-1024-azure #30-Ubuntu SMP Wed Nov 16 23:37:59 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 3450 s 0 s 292 s 6019 s 0 s #2 2294 MHz 3755 s 0 s 335 s 5629 s 0 s Memory: 6.781219482421875 GB (4612.109375 MB free) Uptime: 986.12 sec Load Avg: 1.01 1.03 0.73 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-13.0.1 (ORCJIT, broadwell) Threads: 1 on 2 virtual cores ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 1 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Address sizes: 46 bits physical, 48 bits virtual Byte Order: Little Endian CPU(s): 2 On-line CPU(s) list: 0,1 Vendor ID: GenuineIntel Model name: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz CPU family: 6 Model: 79 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 Stepping: 1 BogoMIPS: 4589.37 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm rdseed adx smap xsaveopt md_clear Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 64 KiB (2 instances) L1i cache: 64 KiB (2 instances) L2 cache: 512 KiB (2 instances) L3 cache: 50 MiB (1 instance) NUMA node(s): 1 NUMA node0 CPU(s): 0,1 Vulnerability Itlb multihit: KVM: Mitigation: VMX unsupported Vulnerability L1tf: Mitigation; PTE Inversion Vulnerability Mds: Mitigation; Clear CPU buffers; SMT Host state unknown Vulnerability Meltdown: Mitigation; PTI Vulnerability Mmio stale data: Vulnerable: Clear CPU buffers attempted, no microcode; SMT Host state unknown Vulnerability Retbleed: Not affected Vulnerability Spec store bypass: Vulnerable Vulnerability Spectre v1: Mitigation; usercopy/swapgs barriers and __user pointer sanitization Vulnerability Spectre v2: Mitigation; Retpolines, STIBP disabled, RSB filling, PBRSB-eIBRS Not affected Vulnerability Srbds: Not affected Vulnerability Tsx async abort: Mitigation; Clear CPU buffers; SMT Host state unknown | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz | | Vendor | :Intel | | Architecture | :Broadwell | | Model | Family: 0x06, Model: 0x4f, Stepping: 0x01, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading hardware capability detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 256, 51200) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 46 bits physical | | SIMD | 256 bit = 32 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |
github-actions[bot] commented 1 year ago
Benchmark result # Judge result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmarks: - Target: 28 Dec 2022 - 22:28 - Baseline: 28 Dec 2022 - 22:32 * Package commits: - Target: f0afe8 - Baseline: be521a * Julia commits: - Target: 00177e - Baseline: 00177e * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |----------------------------------------------------|---------------|--------------| | `["rips", "dense", "fract-r.dist"]` | 1.06 (5%) :x: | 1.00 (1%) | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["alpha"]` - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ### Target ``` Julia Version 1.8.4 Commit 00177ebc4fc (2022-12-23 21:32 UTC) Platform Info: OS: Linux (x86_64-linux-gnu) Ubuntu 22.04.1 LTS uname: Linux 5.15.0-1024-azure #30-Ubuntu SMP Wed Nov 16 23:37:59 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v3 @ 2.40GHz: speed user nice sys idle irq #1 2394 MHz 3090 s 0 s 258 s 3336 s 0 s #2 2394 MHz 1420 s 0 s 240 s 5008 s 0 s Memory: 6.781219482421875 GB (4692.40234375 MB free) Uptime: 679.3 sec Load Avg: 1.04 1.0 0.56 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-13.0.1 (ORCJIT, haswell) Threads: 1 on 2 virtual cores ``` ### Baseline ``` Julia Version 1.8.4 Commit 00177ebc4fc (2022-12-23 21:32 UTC) Platform Info: OS: Linux (x86_64-linux-gnu) Ubuntu 22.04.1 LTS uname: Linux 5.15.0-1024-azure #30-Ubuntu SMP Wed Nov 16 23:37:59 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v3 @ 2.40GHz: speed user nice sys idle irq #1 2394 MHz 5265 s 0 s 315 s 3389 s 0 s #2 2394 MHz 1481 s 0 s 247 s 7219 s 0 s Memory: 6.781219482421875 GB (4664.23046875 MB free) Uptime: 908.07 sec Load Avg: 1.08 1.02 0.67 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-13.0.1 (ORCJIT, haswell) Threads: 1 on 2 virtual cores ``` --- # Target result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 28 Dec 2022 - 22:28 * Package commit: f0afe8 * Julia commit: 00177e * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|-----------------:|------------:| | `["alpha", "klein500.pts"]` | 25.161 s (5%) | 1.164 s | 3.51 GiB (1%) | 40790562 | | `["alpha", "torus10k.pts"]` | 6.798 s (5%) | 213.428 ms | 1008.48 MiB (1%) | 11172402 | | `["cubical", "bonsai64.dipha"]` | 7.987 s (5%) | 192.365 ms | 751.44 MiB (1%) | 9018085 | | `["cubical", "lena2048.dipha"]` | 7.932 s (5%) | 441.941 ms | 1.63 GiB (1%) | 5595397 | | `["homology", "klein200.pts"]` | 3.623 s (5%) | 75.554 ms | 352.61 MiB (1%) | 6453788 | | `["homology", "lena1024.dipha"]` | 8.326 s (5%) | 194.335 ms | 855.03 MiB (1%) | 8932402 | | `["homology", "sphere100.pts"]` | 1.676 s (5%) | 25.754 ms | 107.50 MiB (1%) | 1589995 | | `["rips", "dense", "dragon2000.pts"]` | 2.970 s (5%) | 21.243 ms | 271.30 MiB (1%) | 11411 | | `["rips", "dense", "fract-r.dist"]` | 23.053 s (5%) | 314.948 ms | 1.84 GiB (1%) | 5108 | | `["rips", "dense", "o3_1024.pts"]` | 6.218 s (5%) | 92.938 ms | 426.23 MiB (1%) | 2860673 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 10.630 s (5%) | 129.381 ms | 697.46 MiB (1%) | 6670751 | | `["rips", "sparse", "dragon2000.pts"]` | 3.489 s (5%) | 17.763 ms | 301.65 MiB (1%) | 7409 | | `["rips", "sparse", "fract-r.dist"]` | 26.331 s (5%) | 309.543 ms | 1.84 GiB (1%) | 4082 | | `["rips", "sparse", "o3_1024.pts"]` | 3.114 s (5%) | 15.883 ms | 279.93 MiB (1%) | 4138 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["alpha"]` - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.8.4 Commit 00177ebc4fc (2022-12-23 21:32 UTC) Platform Info: OS: Linux (x86_64-linux-gnu) Ubuntu 22.04.1 LTS uname: Linux 5.15.0-1024-azure #30-Ubuntu SMP Wed Nov 16 23:37:59 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v3 @ 2.40GHz: speed user nice sys idle irq #1 2394 MHz 3090 s 0 s 258 s 3336 s 0 s #2 2394 MHz 1420 s 0 s 240 s 5008 s 0 s Memory: 6.781219482421875 GB (4692.40234375 MB free) Uptime: 679.3 sec Load Avg: 1.04 1.0 0.56 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-13.0.1 (ORCJIT, haswell) Threads: 1 on 2 virtual cores ``` --- # Baseline result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 28 Dec 2022 - 22:32 * Package commit: be521a * Julia commit: 00177e * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|-----------------:|------------:| | `["alpha", "klein500.pts"]` | 24.505 s (5%) | 1.147 s | 3.51 GiB (1%) | 40792391 | | `["alpha", "torus10k.pts"]` | 6.651 s (5%) | 214.369 ms | 1008.60 MiB (1%) | 11174036 | | `["cubical", "bonsai64.dipha"]` | 8.087 s (5%) | 182.225 ms | 751.55 MiB (1%) | 9020092 | | `["cubical", "lena2048.dipha"]` | 7.940 s (5%) | 436.968 ms | 1.63 GiB (1%) | 5595360 | | `["homology", "klein200.pts"]` | 3.675 s (5%) | 99.639 ms | 352.72 MiB (1%) | 6455106 | | `["homology", "lena1024.dipha"]` | 8.376 s (5%) | 194.519 ms | 855.07 MiB (1%) | 8934056 | | `["homology", "sphere100.pts"]` | 1.608 s (5%) | 25.470 ms | 107.50 MiB (1%) | 1589989 | | `["rips", "dense", "dragon2000.pts"]` | 2.910 s (5%) | 18.392 ms | 271.30 MiB (1%) | 11411 | | `["rips", "dense", "fract-r.dist"]` | 21.849 s (5%) | 304.494 ms | 1.84 GiB (1%) | 5108 | | `["rips", "dense", "o3_1024.pts"]` | 5.955 s (5%) | 88.113 ms | 426.26 MiB (1%) | 2860658 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 10.819 s (5%) | 146.027 ms | 697.58 MiB (1%) | 6672517 | | `["rips", "sparse", "dragon2000.pts"]` | 3.622 s (5%) | 16.273 ms | 301.65 MiB (1%) | 7409 | | `["rips", "sparse", "fract-r.dist"]` | 26.509 s (5%) | 308.689 ms | 1.84 GiB (1%) | 4082 | | `["rips", "sparse", "o3_1024.pts"]` | 3.060 s (5%) | 15.154 ms | 279.93 MiB (1%) | 4138 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["alpha"]` - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.8.4 Commit 00177ebc4fc (2022-12-23 21:32 UTC) Platform Info: OS: Linux (x86_64-linux-gnu) Ubuntu 22.04.1 LTS uname: Linux 5.15.0-1024-azure #30-Ubuntu SMP Wed Nov 16 23:37:59 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v3 @ 2.40GHz: speed user nice sys idle irq #1 2394 MHz 5265 s 0 s 315 s 3389 s 0 s #2 2394 MHz 1481 s 0 s 247 s 7219 s 0 s Memory: 6.781219482421875 GB (4664.23046875 MB free) Uptime: 908.07 sec Load Avg: 1.08 1.02 0.67 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-13.0.1 (ORCJIT, haswell) Threads: 1 on 2 virtual cores ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 1 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Address sizes: 46 bits physical, 48 bits virtual Byte Order: Little Endian CPU(s): 2 On-line CPU(s) list: 0,1 Vendor ID: GenuineIntel Model name: Intel(R) Xeon(R) CPU E5-2673 v3 @ 2.40GHz CPU family: 6 Model: 63 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 Stepping: 2 BogoMIPS: 4788.91 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm invpcid_single pti fsgsbase bmi1 avx2 smep bmi2 erms invpcid xsaveopt md_clear Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 64 KiB (2 instances) L1i cache: 64 KiB (2 instances) L2 cache: 512 KiB (2 instances) L3 cache: 30 MiB (1 instance) NUMA node(s): 1 NUMA node0 CPU(s): 0,1 Vulnerability Itlb multihit: KVM: Mitigation: VMX unsupported Vulnerability L1tf: Mitigation; PTE Inversion Vulnerability Mds: Mitigation; Clear CPU buffers; SMT Host state unknown Vulnerability Meltdown: Mitigation; PTI Vulnerability Mmio stale data: Vulnerable: Clear CPU buffers attempted, no microcode; SMT Host state unknown Vulnerability Retbleed: Not affected Vulnerability Spec store bypass: Vulnerable Vulnerability Spectre v1: Mitigation; usercopy/swapgs barriers and __user pointer sanitization Vulnerability Spectre v2: Mitigation; Retpolines, STIBP disabled, RSB filling, PBRSB-eIBRS Not affected Vulnerability Srbds: Not affected Vulnerability Tsx async abort: Not affected | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) CPU E5-2673 v3 @ 2.40GHz | | Vendor | :Intel | | Architecture | :Haswell | | Model | Family: 0x06, Model: 0x3f, Stepping: 0x02, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading hardware capability detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 256, 30720) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 46 bits physical | | SIMD | 256 bit = 32 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |
coveralls commented 1 year ago

Pull Request Test Coverage Report for Build 3797029853

Changes Missing Coverage Covered Lines Changed/Added Lines %
src/base/primefield.jl 5 6 83.33%
<!-- Total: 5 6 83.33% -->
Totals Coverage Status
Change from base Build 3167653032: -0.05%
Covered Lines: 1722
Relevant Lines: 1786
💛 - Coveralls
github-actions[bot] commented 1 year ago
Benchmark result # Judge result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmarks: - Target: 28 Dec 2022 - 22:56 - Baseline: 28 Dec 2022 - 22:59 * Package commits: - Target: e5806f - Baseline: be521a * Julia commits: - Target: 00177e - Baseline: 00177e * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |----------------------------------------------------|------------------------------|--------------| | `["alpha", "torus10k.pts"]` | 0.90 (5%) :white_check_mark: | 1.00 (1%) | | `["homology", "klein200.pts"]` | 0.86 (5%) :white_check_mark: | 1.00 (1%) | | `["homology", "lena1024.dipha"]` | 0.86 (5%) :white_check_mark: | 1.00 (1%) | | `["homology", "sphere100.pts"]` | 0.86 (5%) :white_check_mark: | 1.00 (1%) | | `["rips", "dense", "o3_1024.pts"]` | 0.93 (5%) :white_check_mark: | 1.00 (1%) | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["alpha"]` - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ### Target ``` Julia Version 1.8.4 Commit 00177ebc4fc (2022-12-23 21:32 UTC) Platform Info: OS: Linux (x86_64-linux-gnu) Ubuntu 22.04.1 LTS uname: Linux 5.15.0-1024-azure #30-Ubuntu SMP Wed Nov 16 23:37:59 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 1303 s 0 s 232 s 4722 s 0 s #2 2095 MHz 2626 s 0 s 235 s 3424 s 0 s Memory: 6.781219482421875 GB (4718.30078125 MB free) Uptime: 636.23 sec Load Avg: 1.04 0.93 0.49 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-13.0.1 (ORCJIT, skylake-avx512) Threads: 1 on 2 virtual cores ``` ### Baseline ``` Julia Version 1.8.4 Commit 00177ebc4fc (2022-12-23 21:32 UTC) Platform Info: OS: Linux (x86_64-linux-gnu) Ubuntu 22.04.1 LTS uname: Linux 5.15.0-1024-azure #30-Ubuntu SMP Wed Nov 16 23:37:59 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 3223 s 0 s 285 s 4792 s 0 s #2 2095 MHz 2707 s 0 s 242 s 5370 s 0 s Memory: 6.781219482421875 GB (4693.54296875 MB free) Uptime: 840.7 sec Load Avg: 1.03 0.99 0.6 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-13.0.1 (ORCJIT, skylake-avx512) Threads: 1 on 2 virtual cores ``` --- # Target result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 28 Dec 2022 - 22:56 * Package commit: e5806f * Julia commit: 00177e * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|-----------------:|------------:| | `["alpha", "klein500.pts"]` | 21.088 s (5%) | 958.893 ms | 3.51 GiB (1%) | 40870619 | | `["alpha", "torus10k.pts"]` | 5.737 s (5%) | 179.896 ms | 1009.57 MiB (1%) | 11182298 | | `["cubical", "bonsai64.dipha"]` | 7.269 s (5%) | 159.016 ms | 756.56 MiB (1%) | 9070771 | | `["cubical", "lena2048.dipha"]` | 7.259 s (5%) | 369.067 ms | 1.64 GiB (1%) | 5616420 | | `["homology", "klein200.pts"]` | 2.904 s (5%) | 59.011 ms | 356.79 MiB (1%) | 6496009 | | `["homology", "lena1024.dipha"]` | 6.978 s (5%) | 156.903 ms | 859.77 MiB (1%) | 8979155 | | `["homology", "sphere100.pts"]` | 1.357 s (5%) | 18.757 ms | 107.56 MiB (1%) | 1591061 | | `["rips", "dense", "dragon2000.pts"]` | 2.789 s (5%) | 12.507 ms | 271.30 MiB (1%) | 11411 | | `["rips", "dense", "fract-r.dist"]` | 19.587 s (5%) | 296.078 ms | 1.84 GiB (1%) | 5108 | | `["rips", "dense", "o3_1024.pts"]` | 5.607 s (5%) | 71.380 ms | 429.84 MiB (1%) | 2897882 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 9.979 s (5%) | 106.372 ms | 700.21 MiB (1%) | 6698909 | | `["rips", "sparse", "dragon2000.pts"]` | 3.280 s (5%) | 12.293 ms | 301.65 MiB (1%) | 7409 | | `["rips", "sparse", "fract-r.dist"]` | 22.753 s (5%) | 280.695 ms | 1.84 GiB (1%) | 4082 | | `["rips", "sparse", "o3_1024.pts"]` | 2.944 s (5%) | 10.940 ms | 279.93 MiB (1%) | 4138 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["alpha"]` - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.8.4 Commit 00177ebc4fc (2022-12-23 21:32 UTC) Platform Info: OS: Linux (x86_64-linux-gnu) Ubuntu 22.04.1 LTS uname: Linux 5.15.0-1024-azure #30-Ubuntu SMP Wed Nov 16 23:37:59 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 1303 s 0 s 232 s 4722 s 0 s #2 2095 MHz 2626 s 0 s 235 s 3424 s 0 s Memory: 6.781219482421875 GB (4718.30078125 MB free) Uptime: 636.23 sec Load Avg: 1.04 0.93 0.49 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-13.0.1 (ORCJIT, skylake-avx512) Threads: 1 on 2 virtual cores ``` --- # Baseline result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 28 Dec 2022 - 22:59 * Package commit: be521a * Julia commit: 00177e * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------|--------------:|-----------:|-----------------:|------------:| | `["alpha", "klein500.pts"]` | 21.967 s (5%) | 977.194 ms | 3.51 GiB (1%) | 40884995 | | `["alpha", "torus10k.pts"]` | 6.375 s (5%) | 188.992 ms | 1009.94 MiB (1%) | 11188139 | | `["cubical", "bonsai64.dipha"]` | 7.183 s (5%) | 160.498 ms | 756.73 MiB (1%) | 9074916 | | `["cubical", "lena2048.dipha"]` | 7.459 s (5%) | 401.134 ms | 1.64 GiB (1%) | 5616291 | | `["homology", "klein200.pts"]` | 3.367 s (5%) | 89.263 ms | 357.46 MiB (1%) | 6506961 | | `["homology", "lena1024.dipha"]` | 8.068 s (5%) | 166.979 ms | 859.85 MiB (1%) | 8984777 | | `["homology", "sphere100.pts"]` | 1.571 s (5%) | 22.121 ms | 107.56 MiB (1%) | 1591062 | | `["rips", "dense", "dragon2000.pts"]` | 2.914 s (5%) | 12.600 ms | 271.30 MiB (1%) | 11411 | | `["rips", "dense", "fract-r.dist"]` | 20.079 s (5%) | 279.461 ms | 1.84 GiB (1%) | 5108 | | `["rips", "dense", "o3_1024.pts"]` | 6.006 s (5%) | 75.915 ms | 430.08 MiB (1%) | 2897795 | | `["rips", "sparse", "alpha_4_sphere_2000.spdist"]` | 9.847 s (5%) | 109.758 ms | 700.67 MiB (1%) | 6706064 | | `["rips", "sparse", "dragon2000.pts"]` | 3.228 s (5%) | 11.769 ms | 301.65 MiB (1%) | 7409 | | `["rips", "sparse", "fract-r.dist"]` | 22.394 s (5%) | 276.990 ms | 1.84 GiB (1%) | 4082 | | `["rips", "sparse", "o3_1024.pts"]` | 2.902 s (5%) | 10.621 ms | 279.93 MiB (1%) | 4138 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["alpha"]` - `["cubical"]` - `["homology"]` - `["rips", "dense"]` - `["rips", "sparse"]` ## Julia versioninfo ``` Julia Version 1.8.4 Commit 00177ebc4fc (2022-12-23 21:32 UTC) Platform Info: OS: Linux (x86_64-linux-gnu) Ubuntu 22.04.1 LTS uname: Linux 5.15.0-1024-azure #30-Ubuntu SMP Wed Nov 16 23:37:59 UTC 2022 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 3223 s 0 s 285 s 4792 s 0 s #2 2095 MHz 2707 s 0 s 242 s 5370 s 0 s Memory: 6.781219482421875 GB (4693.54296875 MB free) Uptime: 840.7 sec Load Avg: 1.03 0.99 0.6 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-13.0.1 (ORCJIT, skylake-avx512) Threads: 1 on 2 virtual cores ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 1 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Address sizes: 46 bits physical, 48 bits virtual Byte Order: Little Endian CPU(s): 2 On-line CPU(s) list: 0,1 Vendor ID: GenuineIntel Model name: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz CPU family: 6 Model: 85 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 Stepping: 4 BogoMIPS: 4190.35 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm avx512f avx512dq rdseed adx smap clflushopt avx512cd avx512bw avx512vl xsaveopt xsavec xsaves md_clear Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 64 KiB (2 instances) L1i cache: 64 KiB (2 instances) L2 cache: 2 MiB (2 instances) L3 cache: 35.8 MiB (1 instance) NUMA node(s): 1 NUMA node0 CPU(s): 0,1 Vulnerability Itlb multihit: KVM: Mitigation: VMX unsupported Vulnerability L1tf: Mitigation; PTE Inversion Vulnerability Mds: Mitigation; Clear CPU buffers; SMT Host state unknown Vulnerability Meltdown: Mitigation; PTI Vulnerability Mmio stale data: Vulnerable: Clear CPU buffers attempted, no microcode; SMT Host state unknown Vulnerability Retbleed: Vulnerable Vulnerability Spec store bypass: Vulnerable Vulnerability Spectre v1: Mitigation; usercopy/swapgs barriers and __user pointer sanitization Vulnerability Spectre v2: Mitigation; Retpolines, STIBP disabled, RSB filling, PBRSB-eIBRS Not affected Vulnerability Srbds: Not affected Vulnerability Tsx async abort: Mitigation; Clear CPU buffers; SMT Host state unknown | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz | | Vendor | :Intel | | Architecture | :Skylake | | Model | Family: 0x06, Model: 0x55, Stepping: 0x04, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading hardware capability detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 1024, 36608) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 46 bits physical | | SIMD | 512 bit = 64 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |