codecov[bot]
commented
4 years ago Codecov Report
Merging #84 into master will increase coverage by
0.20%. The diff coverage is96.38%.
@@ Coverage Diff @@
## master #84 +/- ##
==========================================
+ Coverage 95.69% 95.90% +0.20%
==========================================
Files 12 13 +1
Lines 813 927 +114
==========================================
+ Hits 778 889 +111
- Misses 35 38 +3 | Impacted Files | Coverage Δ | |
|---|---|---|
| src/Ripserer.jl | 100.00% <ø> (ø) |
|
| src/abstractfiltration.jl | 81.48% <ø> (ø) |
|
| src/reductionmatrix.jl | 98.19% <ø> (ø) |
|
| src/alpha.jl | 93.82% <93.82%> (ø) |
|
| src/custom.jl | 98.48% <98.41%> (-1.52%) |
:arrow_down: |
| src/main.jl | 100.00% <100.00%> (+2.17%) |
:arrow_up: |
| src/ripsfiltration.jl | 100.00% <100.00%> (ø) |
|
| src/simplex.jl | 96.15% <100.00%> (+2.21%) |
:arrow_up: |
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Benchmark result
# Judge result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmarks: - Target: 19 Aug 2020 - 00:59 - Baseline: 19 Aug 2020 - 01:03 * Package commits: - Target: acd8fe - Baseline: 01e72f * Julia commits: - Target: 44fa15 - Baseline: 44fa15 * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |----------------------------------------------------------------|------------|---------------| | `["torus", "n=81, dim_max=4, modulus=3, threshold=1"]` | 1.01 (5%) | 1.01 (1%) :x: | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["coboundary"]` - `["image"]` - `["sparse"]` - `["torus"]` ## Julia versioninfo ### Target ``` Julia Version 1.4.2 Commit 44fa15b150* (2020-05-23 18:35 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.4 LTS uname: Linux 5.3.0-1034-azure #35~18.04.1-Ubuntu SMP Mon Jul 13 12:54:45 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v3 @ 2.40GHz: speed user nice sys idle irq #1 2397 MHz 18524 s 0 s 1728 s 21858 s 0 s #2 2397 MHz 19424 s 0 s 2812 s 20212 s 0 s Memory: 6.764881134033203 GB (2052.20703125 MB free) Uptime: 440.0 sec Load Avg: 1.00244140625 0.91943359375 0.5 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-8.0.1 (ORCJIT, haswell) ``` ### Baseline ``` Julia Version 1.4.2 Commit 44fa15b150* (2020-05-23 18:35 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.4 LTS uname: Linux 5.3.0-1034-azure #35~18.04.1-Ubuntu SMP Mon Jul 13 12:54:45 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v3 @ 2.40GHz: speed user nice sys idle irq #1 2397 MHz 39444 s 0 s 3204 s 23240 s 0 s #2 2397 MHz 20873 s 0 s 2910 s 42642 s 0 s Memory: 6.764881134033203 GB (1949.2265625 MB free) Uptime: 681.0 sec Load Avg: 1.0068359375 0.98095703125 0.6328125 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-8.0.1 (ORCJIT, haswell) ``` --- # Target result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 19 Aug 2020 - 0:59 * Package commit: acd8fe * Julia commit: 44fa15 * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------------------|----------------:|-----------:|----------------:|------------:| | `["coboundary", "full, no threshold"]` | 5.584 s (5%) | | 3.05 MiB (1%) | 50000 | | `["coboundary", "full, threshold=1"]` | 3.642 s (5%) | | 3.05 MiB (1%) | 50000 | | `["coboundary", "sparse, 25% full"]` | 215.322 ms (5%) | | 4.27 MiB (1%) | 40000 | | `["coboundary", "sparse, 50% full"]` | 1.052 s (5%) | | 2.14 MiB (1%) | 20000 | | `["coboundary", "sparse, 75% full"]` | 1.404 s (5%) | | 1.07 MiB (1%) | 10000 | | `["image", "bonsai"]` | 2.499 s (5%) | 59.372 ms | 311.45 MiB (1%) | 4091791 | | `["image", "hubble"]` | 6.357 s (5%) | 284.662 ms | 1.74 GiB (1%) | 33913137 | | `["sparse", "20 tori with 100 points, dim_max=2, modulus=3"]` | 5.509 s (5%) | 90.359 ms | 1.07 GiB (1%) | 7796707 | | `["sparse", "20 tori with 300 points, dim_max=1, modulus=3"]` | 7.584 s (5%) | | 443.02 MiB (1%) | 4821775 | | `["sparse", "20 tori with 50 points, dim_max=3, modulus=2"]` | 7.408 s (5%) | 97.784 ms | 1.47 GiB (1%) | 11359462 | | `["sparse", "30 tori with 200 points, dim_max=1, modulus=2"]` | 3.196 s (5%) | 54.070 ms | 256.17 MiB (1%) | 3243150 | | `["torus", "n=1024, dim_max=1, modulus=2, threshold=1"]` | 9.916 s (5%) | | 463.39 MiB (1%) | 1084896 | | `["torus", "n=1024, dim_max=1, modulus=7, threshold=nothing"]` | 34.875 s (5%) | 31.659 ms | 1.54 GiB (1%) | 2404521 | | `["torus", "n=256, dim_max=2, modulus=2, threshold=nothing"]` | 2.994 s (5%) | 33.503 ms | 594.86 MiB (1%) | 5233254 | | `["torus", "n=256, dim_max=2, modulus=7, threshold=1"]` | 2.009 s (5%) | 35.844 ms | 336.16 MiB (1%) | 2819254 | | `["torus", "n=64, dim_max=4, modulus=2, threshold=nothing"]` | 6.325 s (5%) | 104.164 ms | 1.17 GiB (1%) | 10879066 | | `["torus", "n=81, dim_max=4, modulus=3, threshold=1"]` | 9.591 s (5%) | 122.250 ms | 1.35 GiB (1%) | 14756747 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["coboundary"]` - `["image"]` - `["sparse"]` - `["torus"]` ## Julia versioninfo ``` Julia Version 1.4.2 Commit 44fa15b150* (2020-05-23 18:35 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.4 LTS uname: Linux 5.3.0-1034-azure #35~18.04.1-Ubuntu SMP Mon Jul 13 12:54:45 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v3 @ 2.40GHz: speed user nice sys idle irq #1 2397 MHz 18524 s 0 s 1728 s 21858 s 0 s #2 2397 MHz 19424 s 0 s 2812 s 20212 s 0 s Memory: 6.764881134033203 GB (2052.20703125 MB free) Uptime: 440.0 sec Load Avg: 1.00244140625 0.91943359375 0.5 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-8.0.1 (ORCJIT, haswell) ``` --- # Baseline result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 19 Aug 2020 - 1:3 * Package commit: 01e72f * Julia commit: 44fa15 * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------------------|----------------:|-----------:|----------------:|------------:| | `["coboundary", "full, no threshold"]` | 5.385 s (5%) | | 3.05 MiB (1%) | 50000 | | `["coboundary", "full, threshold=1"]` | 3.708 s (5%) | | 3.05 MiB (1%) | 50000 | | `["coboundary", "sparse, 25% full"]` | 215.925 ms (5%) | | 4.27 MiB (1%) | 40000 | | `["coboundary", "sparse, 50% full"]` | 1.062 s (5%) | | 2.14 MiB (1%) | 20000 | | `["coboundary", "sparse, 75% full"]` | 1.410 s (5%) | | 1.07 MiB (1%) | 10000 | | `["image", "bonsai"]` | 2.497 s (5%) | 57.275 ms | 311.45 MiB (1%) | 4091791 | | `["image", "hubble"]` | 6.389 s (5%) | 281.301 ms | 1.74 GiB (1%) | 33913123 | | `["sparse", "20 tori with 100 points, dim_max=2, modulus=3"]` | 5.458 s (5%) | 91.768 ms | 1.07 GiB (1%) | 7796600 | | `["sparse", "20 tori with 300 points, dim_max=1, modulus=3"]` | 7.649 s (5%) | | 443.02 MiB (1%) | 4821722 | | `["sparse", "20 tori with 50 points, dim_max=3, modulus=2"]` | 7.251 s (5%) | 96.759 ms | 1.46 GiB (1%) | 11304113 | | `["sparse", "30 tori with 200 points, dim_max=1, modulus=2"]` | 3.145 s (5%) | 45.395 ms | 256.16 MiB (1%) | 3243097 | | `["torus", "n=1024, dim_max=1, modulus=2, threshold=1"]` | 10.002 s (5%) | | 463.39 MiB (1%) | 1084843 | | `["torus", "n=1024, dim_max=1, modulus=7, threshold=nothing"]` | 34.317 s (5%) | 29.148 ms | 1.54 GiB (1%) | 2386470 | | `["torus", "n=256, dim_max=2, modulus=2, threshold=nothing"]` | 3.027 s (5%) | 37.862 ms | 594.86 MiB (1%) | 5233142 | | `["torus", "n=256, dim_max=2, modulus=7, threshold=1"]` | 2.064 s (5%) | 57.338 ms | 336.16 MiB (1%) | 2819142 | | `["torus", "n=64, dim_max=4, modulus=2, threshold=nothing"]` | 6.305 s (5%) | 107.152 ms | 1.17 GiB (1%) | 10878798 | | `["torus", "n=81, dim_max=4, modulus=3, threshold=1"]` | 9.461 s (5%) | 127.062 ms | 1.34 GiB (1%) | 14430882 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["coboundary"]` - `["image"]` - `["sparse"]` - `["torus"]` ## Julia versioninfo ``` Julia Version 1.4.2 Commit 44fa15b150* (2020-05-23 18:35 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.4 LTS uname: Linux 5.3.0-1034-azure #35~18.04.1-Ubuntu SMP Mon Jul 13 12:54:45 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v3 @ 2.40GHz: speed user nice sys idle irq #1 2397 MHz 39444 s 0 s 3204 s 23240 s 0 s #2 2397 MHz 20873 s 0 s 2910 s 42642 s 0 s Memory: 6.764881134033203 GB (1949.2265625 MB free) Uptime: 681.0 sec Load Avg: 1.0068359375 0.98095703125 0.6328125 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-8.0.1 (ORCJIT, haswell) ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 2 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian CPU(s): 2 On-line CPU(s) list: 0,1 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 NUMA node(s): 1 Vendor ID: GenuineIntel CPU family: 6 Model: 63 Model name: Intel(R) Xeon(R) CPU E5-2673 v3 @ 2.40GHz Stepping: 2 CPU MHz: 2397.225 BogoMIPS: 4794.45 Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 32K L1i cache: 32K L2 cache: 256K L3 cache: 30720K NUMA node0 CPU(s): 0,1 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm invpcid_single pti fsgsbase bmi1 avx2 smep bmi2 erms invpcid xsaveopt md_clear | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) CPU E5-2673 v3 @ 2.40GHz | | Vendor | :Intel | | Architecture | :Haswell | | Model | Family: 0x06, Model: 0x3f, Stepping: 0x02, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 256, 30720) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 44 bits physical | | SIMD | 256 bit = 32 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |