search

mtsch / Ripserer.jl

Flexible and efficient persistent homology computation.
https://mtsch.github.io/Ripserer.jl/dev/
MIT License
66 stars 8 forks source link

Joss paper #89

Closed mtsch closed 4 years ago

codecov[bot] commented 4 years ago

Codecov Report

Merging #89 into master will not change coverage. The diff coverage is n/a.

Impacted file tree graph

@@           Coverage Diff           @@
##           master      #89   +/-   ##
=======================================
  Coverage   95.90%   95.90%           
=======================================
  Files          13       13           
  Lines         929      929           
=======================================
  Hits          891      891           
  Misses         38       38

Continue to review full report at Codecov.

Legend - Click here to learn more Δ = absolute <relative> (impact), ø = not affected, ? = missing data Powered by Codecov. Last update 5ab870b...263d5ea. Read the comment docs.

github-actions[bot] commented 4 years ago
Benchmark result # Judge result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmarks: - Target: 26 Aug 2020 - 10:08 - Baseline: 26 Aug 2020 - 10:12 * Package commits: - Target: 0deedb - Baseline: 5ab870 * Julia commits: - Target: 44fa15 - Baseline: 44fa15 * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |----------------------------------------------------------------|------------------------------|--------------| | `["image", "bonsai"]` | 0.94 (5%) :white_check_mark: | 1.00 (1%) | | `["torus", "n=1024, dim_max=1, modulus=7, threshold=nothing"]` | 1.08 (5%) :x: | 1.00 (1%) | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["coboundary"]` - `["image"]` - `["sparse"]` - `["torus"]` ## Julia versioninfo ### Target ``` Julia Version 1.4.2 Commit 44fa15b150* (2020-05-23 18:35 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.3.0-1034-azure #35~18.04.1-Ubuntu SMP Mon Jul 13 12:54:45 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 21493 s 0 s 2408 s 104647 s 0 s #2 2294 MHz 16891 s 0 s 2724 s 109175 s 0 s Memory: 6.764881134033203 GB (1930.9921875 MB free) Uptime: 1305.0 sec Load Avg: 1.03515625 0.84130859375 0.443359375 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-8.0.1 (ORCJIT, broadwell) ``` ### Baseline ``` Julia Version 1.4.2 Commit 44fa15b150* (2020-05-23 18:35 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.3.0-1034-azure #35~18.04.1-Ubuntu SMP Mon Jul 13 12:54:45 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 31819 s 0 s 2831 s 116395 s 0 s #2 2294 MHz 27489 s 0 s 3999 s 119793 s 0 s Memory: 6.764881134033203 GB (1941.9296875 MB free) Uptime: 1531.0 sec Load Avg: 1.095703125 0.96337890625 0.5830078125 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-8.0.1 (ORCJIT, broadwell) ``` --- # Target result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 26 Aug 2020 - 10:8 * Package commit: 0deedb * Julia commit: 44fa15 * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------------------|----------------:|-----------:|----------------:|------------:| | `["coboundary", "full, no threshold"]` | 4.820 s (5%) | | 3.05 MiB (1%) | 50000 | | `["coboundary", "full, threshold=1"]` | 3.287 s (5%) | | 3.05 MiB (1%) | 50000 | | `["coboundary", "sparse, 25% full"]` | 175.187 ms (5%) | | 4.27 MiB (1%) | 40000 | | `["coboundary", "sparse, 50% full"]` | 890.008 ms (5%) | | 2.14 MiB (1%) | 20000 | | `["coboundary", "sparse, 75% full"]` | 1.226 s (5%) | | 1.07 MiB (1%) | 10000 | | `["image", "bonsai"]` | 1.996 s (5%) | 54.055 ms | 311.45 MiB (1%) | 4091823 | | `["image", "hubble"]` | 5.922 s (5%) | 249.009 ms | 1.75 GiB (1%) | 33976178 | | `["sparse", "20 tori with 100 points, dim_max=2, modulus=3"]` | 5.278 s (5%) | 92.031 ms | 1.07 GiB (1%) | 7849654 | | `["sparse", "20 tori with 300 points, dim_max=1, modulus=3"]` | 6.973 s (5%) | | 445.89 MiB (1%) | 4876419 | | `["sparse", "20 tori with 50 points, dim_max=3, modulus=2"]` | 6.982 s (5%) | 96.692 ms | 1.47 GiB (1%) | 11377375 | | `["sparse", "30 tori with 200 points, dim_max=1, modulus=2"]` | 2.847 s (5%) | 43.330 ms | 256.17 MiB (1%) | 3243174 | | `["torus", "n=1024, dim_max=1, modulus=2, threshold=1"]` | 9.169 s (5%) | | 466.16 MiB (1%) | 1138984 | | `["torus", "n=1024, dim_max=1, modulus=7, threshold=nothing"]` | 34.768 s (5%) | 31.914 ms | 1.55 GiB (1%) | 2445907 | | `["torus", "n=256, dim_max=2, modulus=2, threshold=nothing"]` | 2.828 s (5%) | 33.794 ms | 594.87 MiB (1%) | 5233276 | | `["torus", "n=256, dim_max=2, modulus=7, threshold=1"]` | 1.854 s (5%) | 54.592 ms | 336.17 MiB (1%) | 2819276 | | `["torus", "n=64, dim_max=4, modulus=2, threshold=nothing"]` | 5.896 s (5%) | 106.101 ms | 1.18 GiB (1%) | 10985911 | | `["torus", "n=81, dim_max=4, modulus=3, threshold=1"]` | 8.965 s (5%) | 121.779 ms | 1.36 GiB (1%) | 14865396 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["coboundary"]` - `["image"]` - `["sparse"]` - `["torus"]` ## Julia versioninfo ``` Julia Version 1.4.2 Commit 44fa15b150* (2020-05-23 18:35 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.3.0-1034-azure #35~18.04.1-Ubuntu SMP Mon Jul 13 12:54:45 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 21493 s 0 s 2408 s 104647 s 0 s #2 2294 MHz 16891 s 0 s 2724 s 109175 s 0 s Memory: 6.764881134033203 GB (1930.9921875 MB free) Uptime: 1305.0 sec Load Avg: 1.03515625 0.84130859375 0.443359375 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-8.0.1 (ORCJIT, broadwell) ``` --- # Baseline result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 26 Aug 2020 - 10:12 * Package commit: 5ab870 * Julia commit: 44fa15 * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------------------|----------------:|-----------:|----------------:|------------:| | `["coboundary", "full, no threshold"]` | 4.882 s (5%) | | 3.05 MiB (1%) | 50000 | | `["coboundary", "full, threshold=1"]` | 3.311 s (5%) | | 3.05 MiB (1%) | 50000 | | `["coboundary", "sparse, 25% full"]` | 178.934 ms (5%) | | 4.27 MiB (1%) | 40000 | | `["coboundary", "sparse, 50% full"]` | 922.929 ms (5%) | | 2.14 MiB (1%) | 20000 | | `["coboundary", "sparse, 75% full"]` | 1.261 s (5%) | | 1.07 MiB (1%) | 10000 | | `["image", "bonsai"]` | 2.118 s (5%) | 57.819 ms | 311.45 MiB (1%) | 4091823 | | `["image", "hubble"]` | 5.779 s (5%) | 255.987 ms | 1.75 GiB (1%) | 33976178 | | `["sparse", "20 tori with 100 points, dim_max=2, modulus=3"]` | 5.141 s (5%) | 90.032 ms | 1.07 GiB (1%) | 7849650 | | `["sparse", "20 tori with 300 points, dim_max=1, modulus=3"]` | 7.015 s (5%) | | 445.89 MiB (1%) | 4876419 | | `["sparse", "20 tori with 50 points, dim_max=3, modulus=2"]` | 6.904 s (5%) | 94.858 ms | 1.47 GiB (1%) | 11377380 | | `["sparse", "30 tori with 200 points, dim_max=1, modulus=2"]` | 2.844 s (5%) | 44.734 ms | 256.17 MiB (1%) | 3243174 | | `["torus", "n=1024, dim_max=1, modulus=2, threshold=1"]` | 9.088 s (5%) | | 466.16 MiB (1%) | 1138984 | | `["torus", "n=1024, dim_max=1, modulus=7, threshold=nothing"]` | 32.307 s (5%) | 30.492 ms | 1.55 GiB (1%) | 2445910 | | `["torus", "n=256, dim_max=2, modulus=2, threshold=nothing"]` | 2.835 s (5%) | 32.981 ms | 594.87 MiB (1%) | 5233276 | | `["torus", "n=256, dim_max=2, modulus=7, threshold=1"]` | 1.890 s (5%) | 53.523 ms | 336.17 MiB (1%) | 2819276 | | `["torus", "n=64, dim_max=4, modulus=2, threshold=nothing"]` | 5.744 s (5%) | 104.499 ms | 1.18 GiB (1%) | 10985915 | | `["torus", "n=81, dim_max=4, modulus=3, threshold=1"]` | 8.691 s (5%) | 117.406 ms | 1.36 GiB (1%) | 14865410 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["coboundary"]` - `["image"]` - `["sparse"]` - `["torus"]` ## Julia versioninfo ``` Julia Version 1.4.2 Commit 44fa15b150* (2020-05-23 18:35 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.3.0-1034-azure #35~18.04.1-Ubuntu SMP Mon Jul 13 12:54:45 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 31819 s 0 s 2831 s 116395 s 0 s #2 2294 MHz 27489 s 0 s 3999 s 119793 s 0 s Memory: 6.764881134033203 GB (1941.9296875 MB free) Uptime: 1531.0 sec Load Avg: 1.095703125 0.96337890625 0.5830078125 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-8.0.1 (ORCJIT, broadwell) ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 2 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian CPU(s): 2 On-line CPU(s) list: 0,1 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 NUMA node(s): 1 Vendor ID: GenuineIntel CPU family: 6 Model: 79 Model name: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz Stepping: 1 CPU MHz: 2294.687 BogoMIPS: 4589.37 Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 32K L1i cache: 32K L2 cache: 256K L3 cache: 51200K NUMA node0 CPU(s): 0,1 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm rdseed adx smap xsaveopt md_clear | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz | | Vendor | :Intel | | Architecture | :Broadwell | | Model | Family: 0x06, Model: 0x4f, Stepping: 0x01, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 256, 51200) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 44 bits physical | | SIMD | 256 bit = 32 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |
github-actions[bot] commented 4 years ago
Benchmark result # Judge result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmarks: - Target: 26 Aug 2020 - 10:27 - Baseline: 26 Aug 2020 - 10:31 * Package commits: - Target: abf2df - Baseline: 517fbe * Julia commits: - Target: 44fa15 - Baseline: 44fa15 * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |----------------------------------------------------------------|------------------------------|---------------| | `["coboundary", "sparse, 50% full"]` | 0.85 (5%) :white_check_mark: | 1.00 (1%) | | `["sparse", "20 tori with 100 points, dim_max=2, modulus=3"]` | 1.14 (5%) :x: | 1.03 (1%) :x: | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["coboundary"]` - `["image"]` - `["sparse"]` - `["torus"]` ## Julia versioninfo ### Target ``` Julia Version 1.4.2 Commit 44fa15b150* (2020-05-23 18:35 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.3.0-1034-azure #35~18.04.1-Ubuntu SMP Mon Jul 13 12:54:45 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 15856 s 0 s 2599 s 23922 s 0 s #2 2095 MHz 21134 s 0 s 2441 s 19049 s 0 s Memory: 6.7913818359375 GB (1987.23828125 MB free) Uptime: 444.0 sec Load Avg: 1.0 0.85009765625 0.45068359375 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-8.0.1 (ORCJIT, skylake) ``` ### Baseline ``` Julia Version 1.4.2 Commit 44fa15b150* (2020-05-23 18:35 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.3.0-1034-azure #35~18.04.1-Ubuntu SMP Mon Jul 13 12:54:45 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 29607 s 0 s 3359 s 32920 s 0 s #2 2095 MHz 29368 s 0 s 3344 s 33440 s 0 s Memory: 6.7913818359375 GB (1957.75390625 MB free) Uptime: 680.0 sec Load Avg: 1.013671875 0.95166015625 0.5869140625 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-8.0.1 (ORCJIT, skylake) ``` --- # Target result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 26 Aug 2020 - 10:27 * Package commit: abf2df * Julia commit: 44fa15 * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------------------|----------------:|-----------:|----------------:|------------:| | `["coboundary", "full, no threshold"]` | 5.024 s (5%) | | 3.05 MiB (1%) | 50000 | | `["coboundary", "full, threshold=1"]` | 3.614 s (5%) | | 3.05 MiB (1%) | 50000 | | `["coboundary", "sparse, 25% full"]` | 185.326 ms (5%) | | 4.27 MiB (1%) | 40000 | | `["coboundary", "sparse, 50% full"]` | 783.705 ms (5%) | | 2.14 MiB (1%) | 20000 | | `["coboundary", "sparse, 75% full"]` | 1.195 s (5%) | | 1.07 MiB (1%) | 10000 | | `["image", "bonsai"]` | 2.212 s (5%) | 52.418 ms | 311.45 MiB (1%) | 4091823 | | `["image", "hubble"]` | 5.813 s (5%) | 247.618 ms | 1.75 GiB (1%) | 33976189 | | `["sparse", "20 tori with 100 points, dim_max=2, modulus=3"]` | 5.035 s (5%) | 79.277 ms | 1.07 GiB (1%) | 7849647 | | `["sparse", "20 tori with 300 points, dim_max=1, modulus=3"]` | 7.034 s (5%) | | 445.89 MiB (1%) | 4876418 | | `["sparse", "20 tori with 50 points, dim_max=3, modulus=2"]` | 6.675 s (5%) | 87.666 ms | 1.47 GiB (1%) | 11377349 | | `["sparse", "30 tori with 200 points, dim_max=1, modulus=2"]` | 2.850 s (5%) | 40.202 ms | 256.17 MiB (1%) | 3243174 | | `["torus", "n=1024, dim_max=1, modulus=2, threshold=1"]` | 9.563 s (5%) | | 466.97 MiB (1%) | 1138984 | | `["torus", "n=1024, dim_max=1, modulus=7, threshold=nothing"]` | 34.714 s (5%) | 26.028 ms | 1.55 GiB (1%) | 2445910 | | `["torus", "n=256, dim_max=2, modulus=2, threshold=nothing"]` | 2.824 s (5%) | 29.637 ms | 594.87 MiB (1%) | 5233276 | | `["torus", "n=256, dim_max=2, modulus=7, threshold=1"]` | 1.898 s (5%) | 30.024 ms | 336.17 MiB (1%) | 2819276 | | `["torus", "n=64, dim_max=4, modulus=2, threshold=nothing"]` | 5.828 s (5%) | 96.264 ms | 1.18 GiB (1%) | 10985918 | | `["torus", "n=81, dim_max=4, modulus=3, threshold=1"]` | 8.962 s (5%) | 116.395 ms | 1.36 GiB (1%) | 14865465 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["coboundary"]` - `["image"]` - `["sparse"]` - `["torus"]` ## Julia versioninfo ``` Julia Version 1.4.2 Commit 44fa15b150* (2020-05-23 18:35 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.3.0-1034-azure #35~18.04.1-Ubuntu SMP Mon Jul 13 12:54:45 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 15856 s 0 s 2599 s 23922 s 0 s #2 2095 MHz 21134 s 0 s 2441 s 19049 s 0 s Memory: 6.7913818359375 GB (1987.23828125 MB free) Uptime: 444.0 sec Load Avg: 1.0 0.85009765625 0.45068359375 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-8.0.1 (ORCJIT, skylake) ``` --- # Baseline result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 26 Aug 2020 - 10:31 * Package commit: 517fbe * Julia commit: 44fa15 * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------------------|----------------:|-----------:|----------------:|------------:| | `["coboundary", "full, no threshold"]` | 5.236 s (5%) | | 3.05 MiB (1%) | 50000 | | `["coboundary", "full, threshold=1"]` | 3.691 s (5%) | | 3.05 MiB (1%) | 50000 | | `["coboundary", "sparse, 25% full"]` | 186.286 ms (5%) | | 4.27 MiB (1%) | 40000 | | `["coboundary", "sparse, 50% full"]` | 919.850 ms (5%) | | 2.14 MiB (1%) | 20000 | | `["coboundary", "sparse, 75% full"]` | 1.250 s (5%) | | 1.07 MiB (1%) | 10000 | | `["image", "bonsai"]` | 2.268 s (5%) | 48.144 ms | 311.45 MiB (1%) | 4091823 | | `["image", "hubble"]` | 5.811 s (5%) | 247.868 ms | 1.75 GiB (1%) | 33976184 | | `["sparse", "20 tori with 100 points, dim_max=2, modulus=3"]` | 4.422 s (5%) | 45.777 ms | 1.04 GiB (1%) | 7162714 | | `["sparse", "20 tori with 300 points, dim_max=1, modulus=3"]` | 7.201 s (5%) | | 445.89 MiB (1%) | 4876418 | | `["sparse", "20 tori with 50 points, dim_max=3, modulus=2"]` | 6.696 s (5%) | 87.647 ms | 1.47 GiB (1%) | 11377351 | | `["sparse", "30 tori with 200 points, dim_max=1, modulus=2"]` | 2.822 s (5%) | 37.733 ms | 256.17 MiB (1%) | 3243174 | | `["torus", "n=1024, dim_max=1, modulus=2, threshold=1"]` | 9.734 s (5%) | | 466.97 MiB (1%) | 1138984 | | `["torus", "n=1024, dim_max=1, modulus=7, threshold=nothing"]` | 35.068 s (5%) | 27.567 ms | 1.55 GiB (1%) | 2445907 | | `["torus", "n=256, dim_max=2, modulus=2, threshold=nothing"]` | 2.862 s (5%) | 39.132 ms | 594.87 MiB (1%) | 5233276 | | `["torus", "n=256, dim_max=2, modulus=7, threshold=1"]` | 1.974 s (5%) | 30.405 ms | 336.17 MiB (1%) | 2819276 | | `["torus", "n=64, dim_max=4, modulus=2, threshold=nothing"]` | 6.013 s (5%) | 99.792 ms | 1.18 GiB (1%) | 10985947 | | `["torus", "n=81, dim_max=4, modulus=3, threshold=1"]` | 8.948 s (5%) | 115.045 ms | 1.36 GiB (1%) | 14865401 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["coboundary"]` - `["image"]` - `["sparse"]` - `["torus"]` ## Julia versioninfo ``` Julia Version 1.4.2 Commit 44fa15b150* (2020-05-23 18:35 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.3.0-1034-azure #35~18.04.1-Ubuntu SMP Mon Jul 13 12:54:45 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 29607 s 0 s 3359 s 32920 s 0 s #2 2095 MHz 29368 s 0 s 3344 s 33440 s 0 s Memory: 6.7913818359375 GB (1957.75390625 MB free) Uptime: 680.0 sec Load Avg: 1.013671875 0.95166015625 0.5869140625 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-8.0.1 (ORCJIT, skylake) ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 2 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian CPU(s): 2 On-line CPU(s) list: 0,1 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 NUMA node(s): 1 Vendor ID: GenuineIntel CPU family: 6 Model: 85 Model name: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz Stepping: 4 CPU MHz: 2095.076 BogoMIPS: 4190.15 Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 32K L1i cache: 32K L2 cache: 1024K L3 cache: 36608K NUMA node0 CPU(s): 0,1 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm mpx avx512f avx512dq rdseed adx smap clflushopt avx512cd avx512bw avx512vl xsaveopt xsavec xsaves md_clear | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz | | Vendor | :Intel | | Architecture | :Skylake | | Model | Family: 0x06, Model: 0x55, Stepping: 0x04, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 1024, 36608) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 46 bits physical | | SIMD | 512 bit = 64 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |