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mtsch / Ripserer.jl

Flexible and efficient persistent homology computation.
https://mtsch.github.io/Ripserer.jl/dev/
MIT License
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Filtration refactor #98

Closed mtsch closed 4 years ago

mtsch commented 4 years ago

Simplify interfaces:

Other improvements:

codecov[bot] commented 4 years ago

Codecov Report

Merging #98 into master will increase coverage by 0.72%. The diff coverage is 100.00%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master      #98      +/-   ##
==========================================
+ Coverage   95.98%   96.70%   +0.72%     
==========================================
  Files          13       13              
  Lines         947     1063     +116     
==========================================
+ Hits          909     1028     +119     
+ Misses         38       35       -3
Impacted Files Coverage Δ
src/filtrations/alpha.jl 96.47% <ø> (+2.64%) :arrow_up:
src/abstractfiltration.jl 82.35% <100.00%> (-1.52%) :arrow_down:
src/filtrations/cubical.jl 100.00% <100.00%> (+0.86%) :arrow_up:
src/filtrations/custom.jl 98.59% <100.00%> (+0.10%) :arrow_up:
src/filtrations/rips.jl 100.00% <100.00%> (ø)
src/main.jl 100.00% <100.00%> (ø)
src/reductionmatrix.jl 98.55% <100.00%> (+0.18%) :arrow_up:
src/zerodimensional.jl 100.00% <100.00%> (ø)
... and 10 more

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github-actions[bot] commented 4 years ago
Benchmark result # Judge result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmarks: - Target: 13 Sep 2020 - 02:35 - Baseline: 13 Sep 2020 - 02:39 * Package commits: - Target: 7e561e - Baseline: 594a76 * Julia commits: - Target: 44fa15 - Baseline: 44fa15 * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |----------------------------------------------------------------|---------------|------------------------------| | `["coboundary", "full, threshold=1"]` | 1.15 (5%) :x: | 1.00 (1%) | | `["coboundary", "sparse, 50% full"]` | 1.13 (5%) :x: | 1.00 (1%) | | `["sparse", "20 tori with 300 points, dim_max=1, modulus=3"]` | 1.28 (5%) :x: | 0.88 (1%) :white_check_mark: | | `["sparse", "30 tori with 200 points, dim_max=1, modulus=2"]` | 1.93 (5%) :x: | 1.08 (1%) :x: | | `["torus", "n=1024, dim_max=1, modulus=2, threshold=1"]` | 0.99 (5%) | 1.02 (1%) :x: | | `["torus", "n=81, dim_max=4, modulus=3, threshold=1"]` | 1.12 (5%) :x: | 1.12 (1%) :x: | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["coboundary"]` - `["image"]` - `["sparse"]` - `["torus"]` ## Julia versioninfo ### Target ``` Julia Version 1.4.2 Commit 44fa15b150* (2020-05-23 18:35 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1023-azure #23~18.04.1-Ubuntu SMP Thu Aug 20 14:46:48 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 24889 s 0 s 2302 s 22168 s 0 s #2 2095 MHz 16617 s 0 s 2936 s 30031 s 0 s Memory: 6.764892578125 GB (2027.984375 MB free) Uptime: 516.0 sec Load Avg: 1.0185546875 0.888671875 0.478515625 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-8.0.1 (ORCJIT, skylake) ``` ### Baseline ``` Julia Version 1.4.2 Commit 44fa15b150* (2020-05-23 18:35 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1023-azure #23~18.04.1-Ubuntu SMP Thu Aug 20 14:46:48 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 47466 s 0 s 3910 s 23054 s 0 s #2 2095 MHz 17610 s 0 s 3077 s 54071 s 0 s Memory: 6.764892578125 GB (1928.14453125 MB free) Uptime: 769.0 sec Load Avg: 1.0478515625 0.984375 0.62451171875 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-8.0.1 (ORCJIT, skylake) ``` --- # Target result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 13 Sep 2020 - 2:35 * Package commit: 7e561e * Julia commit: 44fa15 * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------------------|----------------:|-----------:|----------------:|------------:| | `["coboundary", "full, no threshold"]` | 5.559 s (5%) | | 3.05 MiB (1%) | 50000 | | `["coboundary", "full, threshold=1"]` | 4.482 s (5%) | | 3.05 MiB (1%) | 50000 | | `["coboundary", "sparse, 25% full"]` | 200.799 ms (5%) | | 4.27 MiB (1%) | 40000 | | `["coboundary", "sparse, 50% full"]` | 989.484 ms (5%) | | 2.14 MiB (1%) | 20000 | | `["coboundary", "sparse, 75% full"]` | 1.334 s (5%) | | 1.07 MiB (1%) | 10000 | | `["image", "bonsai"]` | 2.369 s (5%) | 55.215 ms | 311.45 MiB (1%) | 4091823 | | `["image", "hubble"]` | 6.281 s (5%) | 262.715 ms | 1.75 GiB (1%) | 34058765 | | `["sparse", "20 tori with 100 points, dim_max=2, modulus=3"]` | 5.720 s (5%) | 92.000 ms | 1.06 GiB (1%) | 7670424 | | `["sparse", "20 tori with 300 points, dim_max=1, modulus=3"]` | 10.301 s (5%) | | 393.57 MiB (1%) | 3126871 | | `["sparse", "20 tori with 50 points, dim_max=3, modulus=2"]` | 7.383 s (5%) | 103.079 ms | 1.47 GiB (1%) | 11381515 | | `["sparse", "30 tori with 200 points, dim_max=1, modulus=2"]` | 5.975 s (5%) | | 277.15 MiB (1%) | 3178105 | | `["torus", "n=1024, dim_max=1, modulus=2, threshold=1"]` | 10.582 s (5%) | | 474.29 MiB (1%) | 1140016 | | `["torus", "n=1024, dim_max=1, modulus=7, threshold=nothing"]` | 37.163 s (5%) | 25.863 ms | 1.55 GiB (1%) | 2455497 | | `["torus", "n=256, dim_max=2, modulus=2, threshold=nothing"]` | 3.032 s (5%) | 32.346 ms | 595.40 MiB (1%) | 5233536 | | `["torus", "n=256, dim_max=2, modulus=7, threshold=1"]` | 2.111 s (5%) | 32.247 ms | 336.70 MiB (1%) | 2819536 | | `["torus", "n=64, dim_max=4, modulus=2, threshold=nothing"]` | 6.318 s (5%) | 104.896 ms | 1.18 GiB (1%) | 11057094 | | `["torus", "n=81, dim_max=4, modulus=3, threshold=1"]` | 10.573 s (5%) | 202.666 ms | 1.53 GiB (1%) | 18257612 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["coboundary"]` - `["image"]` - `["sparse"]` - `["torus"]` ## Julia versioninfo ``` Julia Version 1.4.2 Commit 44fa15b150* (2020-05-23 18:35 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1023-azure #23~18.04.1-Ubuntu SMP Thu Aug 20 14:46:48 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 24889 s 0 s 2302 s 22168 s 0 s #2 2095 MHz 16617 s 0 s 2936 s 30031 s 0 s Memory: 6.764892578125 GB (2027.984375 MB free) Uptime: 516.0 sec Load Avg: 1.0185546875 0.888671875 0.478515625 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-8.0.1 (ORCJIT, skylake) ``` --- # Baseline result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 13 Sep 2020 - 2:39 * Package commit: 594a76 * Julia commit: 44fa15 * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------------------|----------------:|-----------:|----------------:|------------:| | `["coboundary", "full, no threshold"]` | 5.491 s (5%) | | 3.05 MiB (1%) | 50000 | | `["coboundary", "full, threshold=1"]` | 3.885 s (5%) | | 3.05 MiB (1%) | 50000 | | `["coboundary", "sparse, 25% full"]` | 198.966 ms (5%) | | 4.27 MiB (1%) | 40000 | | `["coboundary", "sparse, 50% full"]` | 874.112 ms (5%) | | 2.14 MiB (1%) | 20000 | | `["coboundary", "sparse, 75% full"]` | 1.311 s (5%) | | 1.07 MiB (1%) | 10000 | | `["image", "bonsai"]` | 2.361 s (5%) | 51.704 ms | 311.45 MiB (1%) | 4091823 | | `["image", "hubble"]` | 6.245 s (5%) | 266.089 ms | 1.75 GiB (1%) | 34016396 | | `["sparse", "20 tori with 100 points, dim_max=2, modulus=3"]` | 5.561 s (5%) | 85.510 ms | 1.07 GiB (1%) | 7846671 | | `["sparse", "20 tori with 300 points, dim_max=1, modulus=3"]` | 8.032 s (5%) | | 446.41 MiB (1%) | 4886040 | | `["sparse", "20 tori with 50 points, dim_max=3, modulus=2"]` | 7.248 s (5%) | 101.513 ms | 1.47 GiB (1%) | 11397658 | | `["sparse", "30 tori with 200 points, dim_max=1, modulus=2"]` | 3.093 s (5%) | 40.466 ms | 256.17 MiB (1%) | 3243174 | | `["torus", "n=1024, dim_max=1, modulus=2, threshold=1"]` | 10.686 s (5%) | | 466.16 MiB (1%) | 1138984 | | `["torus", "n=1024, dim_max=1, modulus=7, threshold=nothing"]` | 35.921 s (5%) | 27.403 ms | 1.55 GiB (1%) | 2455448 | | `["torus", "n=256, dim_max=2, modulus=2, threshold=nothing"]` | 3.114 s (5%) | 31.391 ms | 594.87 MiB (1%) | 5233276 | | `["torus", "n=256, dim_max=2, modulus=7, threshold=1"]` | 2.097 s (5%) | 31.936 ms | 336.17 MiB (1%) | 2819276 | | `["torus", "n=64, dim_max=4, modulus=2, threshold=nothing"]` | 6.245 s (5%) | 101.287 ms | 1.18 GiB (1%) | 11024318 | | `["torus", "n=81, dim_max=4, modulus=3, threshold=1"]` | 9.433 s (5%) | 113.657 ms | 1.37 GiB (1%) | 15007479 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["coboundary"]` - `["image"]` - `["sparse"]` - `["torus"]` ## Julia versioninfo ``` Julia Version 1.4.2 Commit 44fa15b150* (2020-05-23 18:35 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1023-azure #23~18.04.1-Ubuntu SMP Thu Aug 20 14:46:48 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 47466 s 0 s 3910 s 23054 s 0 s #2 2095 MHz 17610 s 0 s 3077 s 54071 s 0 s Memory: 6.764892578125 GB (1928.14453125 MB free) Uptime: 769.0 sec Load Avg: 1.0478515625 0.984375 0.62451171875 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-8.0.1 (ORCJIT, skylake) ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 2 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian CPU(s): 2 On-line CPU(s) list: 0,1 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 NUMA node(s): 1 Vendor ID: GenuineIntel CPU family: 6 Model: 85 Model name: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz Stepping: 4 CPU MHz: 2095.249 BogoMIPS: 4190.49 Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 32K L1i cache: 32K L2 cache: 1024K L3 cache: 36608K NUMA node0 CPU(s): 0,1 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm mpx avx512f avx512dq rdseed adx smap clflushopt avx512cd avx512bw avx512vl xsaveopt xsavec xsaves md_clear | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz | | Vendor | :Intel | | Architecture | :Skylake | | Model | Family: 0x06, Model: 0x55, Stepping: 0x04, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 1024, 36608) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 44 bits physical | | SIMD | 512 bit = 64 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |
github-actions[bot] commented 4 years ago
Benchmark result # Judge result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmarks: - Target: 13 Sep 2020 - 03:47 - Baseline: 13 Sep 2020 - 03:50 * Package commits: - Target: 9ec1d4 - Baseline: 594a76 * Julia commits: - Target: 44fa15 - Baseline: 44fa15 * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |----------------------------------------------------------------|---------------|------------------------------| | `["coboundary", "full, no threshold"]` | 1.06 (5%) :x: | 1.00 (1%) | | `["coboundary", "full, threshold=1"]` | 1.12 (5%) :x: | 1.00 (1%) | | `["sparse", "20 tori with 300 points, dim_max=1, modulus=3"]` | 0.99 (5%) | 0.88 (1%) :white_check_mark: | | `["sparse", "30 tori with 200 points, dim_max=1, modulus=2"]` | 0.98 (5%) | 0.86 (1%) :white_check_mark: | | `["torus", "n=81, dim_max=4, modulus=3, threshold=1"]` | 1.12 (5%) :x: | 1.13 (1%) :x: | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["coboundary"]` - `["image"]` - `["sparse"]` - `["torus"]` ## Julia versioninfo ### Target ``` Julia Version 1.4.2 Commit 44fa15b150* (2020-05-23 18:35 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1023-azure #23~18.04.1-Ubuntu SMP Thu Aug 20 14:46:48 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 24104 s 0 s 2871 s 25177 s 0 s #2 2095 MHz 12665 s 0 s 2150 s 37606 s 0 s Memory: 6.791393280029297 GB (1974.4609375 MB free) Uptime: 541.0 sec Load Avg: 1.0 0.9013671875 0.51806640625 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-8.0.1 (ORCJIT, skylake) ``` ### Baseline ``` Julia Version 1.4.2 Commit 44fa15b150* (2020-05-23 18:35 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1023-azure #23~18.04.1-Ubuntu SMP Thu Aug 20 14:46:48 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 25362 s 0 s 2939 s 46793 s 0 s #2 2095 MHz 32842 s 0 s 3725 s 38835 s 0 s Memory: 6.791393280029297 GB (2027.4453125 MB free) Uptime: 772.0 sec Load Avg: 1.02978515625 0.974609375 0.64013671875 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-8.0.1 (ORCJIT, skylake) ``` --- # Target result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 13 Sep 2020 - 3:47 * Package commit: 9ec1d4 * Julia commit: 44fa15 * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------------------|----------------:|-----------:|----------------:|------------:| | `["coboundary", "full, no threshold"]` | 5.044 s (5%) | | 3.05 MiB (1%) | 50000 | | `["coboundary", "full, threshold=1"]` | 3.859 s (5%) | | 3.05 MiB (1%) | 50000 | | `["coboundary", "sparse, 25% full"]` | 179.369 ms (5%) | | 4.27 MiB (1%) | 40000 | | `["coboundary", "sparse, 50% full"]` | 868.658 ms (5%) | | 2.14 MiB (1%) | 20000 | | `["coboundary", "sparse, 75% full"]` | 1.202 s (5%) | | 1.07 MiB (1%) | 10000 | | `["image", "bonsai"]` | 2.010 s (5%) | 50.870 ms | 311.45 MiB (1%) | 4091823 | | `["image", "hubble"]` | 5.367 s (5%) | 231.357 ms | 1.75 GiB (1%) | 34058772 | | `["sparse", "20 tori with 100 points, dim_max=2, modulus=3"]` | 4.156 s (5%) | 50.292 ms | 1.03 GiB (1%) | 6966723 | | `["sparse", "20 tori with 300 points, dim_max=1, modulus=3"]` | 6.639 s (5%) | | 394.36 MiB (1%) | 3145769 | | `["sparse", "20 tori with 50 points, dim_max=3, modulus=2"]` | 6.288 s (5%) | 94.106 ms | 1.47 GiB (1%) | 11379482 | | `["sparse", "30 tori with 200 points, dim_max=1, modulus=2"]` | 2.611 s (5%) | | 219.91 MiB (1%) | 2055191 | | `["torus", "n=1024, dim_max=1, modulus=2, threshold=1"]` | 9.103 s (5%) | | 467.10 MiB (1%) | 1142067 | | `["torus", "n=1024, dim_max=1, modulus=7, threshold=nothing"]` | 32.440 s (5%) | 27.698 ms | 1.55 GiB (1%) | 2479505 | | `["torus", "n=256, dim_max=2, modulus=2, threshold=nothing"]` | 2.599 s (5%) | 29.623 ms | 594.90 MiB (1%) | 5234052 | | `["torus", "n=256, dim_max=2, modulus=7, threshold=1"]` | 1.790 s (5%) | 49.994 ms | 336.20 MiB (1%) | 2820052 | | `["torus", "n=64, dim_max=4, modulus=2, threshold=nothing"]` | 5.478 s (5%) | 93.672 ms | 1.18 GiB (1%) | 11079177 | | `["torus", "n=81, dim_max=4, modulus=3, threshold=1"]` | 9.103 s (5%) | 182.932 ms | 1.54 GiB (1%) | 18558017 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["coboundary"]` - `["image"]` - `["sparse"]` - `["torus"]` ## Julia versioninfo ``` Julia Version 1.4.2 Commit 44fa15b150* (2020-05-23 18:35 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1023-azure #23~18.04.1-Ubuntu SMP Thu Aug 20 14:46:48 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 24104 s 0 s 2871 s 25177 s 0 s #2 2095 MHz 12665 s 0 s 2150 s 37606 s 0 s Memory: 6.791393280029297 GB (1974.4609375 MB free) Uptime: 541.0 sec Load Avg: 1.0 0.9013671875 0.51806640625 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-8.0.1 (ORCJIT, skylake) ``` --- # Baseline result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 13 Sep 2020 - 3:50 * Package commit: 594a76 * Julia commit: 44fa15 * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------------------|----------------:|-----------:|----------------:|------------:| | `["coboundary", "full, no threshold"]` | 4.761 s (5%) | | 3.05 MiB (1%) | 50000 | | `["coboundary", "full, threshold=1"]` | 3.436 s (5%) | | 3.05 MiB (1%) | 50000 | | `["coboundary", "sparse, 25% full"]` | 176.611 ms (5%) | | 4.27 MiB (1%) | 40000 | | `["coboundary", "sparse, 50% full"]` | 858.621 ms (5%) | | 2.14 MiB (1%) | 20000 | | `["coboundary", "sparse, 75% full"]` | 1.167 s (5%) | | 1.07 MiB (1%) | 10000 | | `["image", "bonsai"]` | 2.088 s (5%) | 50.141 ms | 311.45 MiB (1%) | 4091823 | | `["image", "hubble"]` | 5.406 s (5%) | 243.307 ms | 1.75 GiB (1%) | 34016399 | | `["sparse", "20 tori with 100 points, dim_max=2, modulus=3"]` | 4.210 s (5%) | 50.451 ms | 1.04 GiB (1%) | 7162714 | | `["sparse", "20 tori with 300 points, dim_max=1, modulus=3"]` | 6.725 s (5%) | | 446.40 MiB (1%) | 4886027 | | `["sparse", "20 tori with 50 points, dim_max=3, modulus=2"]` | 6.360 s (5%) | 91.097 ms | 1.47 GiB (1%) | 11397667 | | `["sparse", "30 tori with 200 points, dim_max=1, modulus=2"]` | 2.663 s (5%) | 40.065 ms | 256.17 MiB (1%) | 3243174 | | `["torus", "n=1024, dim_max=1, modulus=2, threshold=1"]` | 9.013 s (5%) | | 466.97 MiB (1%) | 1138984 | | `["torus", "n=1024, dim_max=1, modulus=7, threshold=nothing"]` | 32.341 s (5%) | 24.669 ms | 1.55 GiB (1%) | 2455447 | | `["torus", "n=256, dim_max=2, modulus=2, threshold=nothing"]` | 2.571 s (5%) | 30.479 ms | 594.87 MiB (1%) | 5233276 | | `["torus", "n=256, dim_max=2, modulus=7, threshold=1"]` | 1.759 s (5%) | 49.376 ms | 336.17 MiB (1%) | 2819276 | | `["torus", "n=64, dim_max=4, modulus=2, threshold=nothing"]` | 5.405 s (5%) | 95.492 ms | 1.18 GiB (1%) | 11024304 | | `["torus", "n=81, dim_max=4, modulus=3, threshold=1"]` | 8.161 s (5%) | 109.706 ms | 1.37 GiB (1%) | 15007531 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["coboundary"]` - `["image"]` - `["sparse"]` - `["torus"]` ## Julia versioninfo ``` Julia Version 1.4.2 Commit 44fa15b150* (2020-05-23 18:35 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1023-azure #23~18.04.1-Ubuntu SMP Thu Aug 20 14:46:48 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 25362 s 0 s 2939 s 46793 s 0 s #2 2095 MHz 32842 s 0 s 3725 s 38835 s 0 s Memory: 6.791393280029297 GB (2027.4453125 MB free) Uptime: 772.0 sec Load Avg: 1.02978515625 0.974609375 0.64013671875 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-8.0.1 (ORCJIT, skylake) ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 2 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian CPU(s): 2 On-line CPU(s) list: 0,1 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 NUMA node(s): 1 Vendor ID: GenuineIntel CPU family: 6 Model: 85 Model name: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz Stepping: 4 CPU MHz: 2095.078 BogoMIPS: 4190.15 Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 32K L1i cache: 32K L2 cache: 1024K L3 cache: 36608K NUMA node0 CPU(s): 0,1 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm mpx avx512f avx512dq rdseed adx smap clflushopt avx512cd avx512bw avx512vl xsaveopt xsavec xsaves md_clear | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz | | Vendor | :Intel | | Architecture | :Skylake | | Model | Family: 0x06, Model: 0x55, Stepping: 0x04, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 1024, 36608) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 46 bits physical | | SIMD | 512 bit = 64 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |
github-actions[bot] commented 4 years ago
Benchmark result # Judge result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmarks: - Target: 13 Sep 2020 - 04:05 - Baseline: 13 Sep 2020 - 04:09 * Package commits: - Target: 2b7a94 - Baseline: 594a76 * Julia commits: - Target: 697e78 - Baseline: 697e78 * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |----------------------------------------------------------------|------------------------------|------------------------------| | `["coboundary", "full, no threshold"]` | 1.06 (5%) :x: | 1.00 (1%) | | `["coboundary", "full, threshold=1"]` | 1.06 (5%) :x: | 1.00 (1%) | | `["image", "hubble"]` | 0.93 (5%) :white_check_mark: | 1.00 (1%) | | `["sparse", "20 tori with 300 points, dim_max=1, modulus=3"]` | 1.00 (5%) | 0.92 (1%) :white_check_mark: | | `["sparse", "30 tori with 200 points, dim_max=1, modulus=2"]` | 0.93 (5%) :white_check_mark: | 0.90 (1%) :white_check_mark: | | `["torus", "n=1024, dim_max=1, modulus=2, threshold=1"]` | 0.92 (5%) :white_check_mark: | 1.02 (1%) :x: | | `["torus", "n=256, dim_max=2, modulus=2, threshold=nothing"]` | 0.95 (5%) :white_check_mark: | 1.00 (1%) | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["coboundary"]` - `["image"]` - `["sparse"]` - `["torus"]` ## Julia versioninfo ### Target ``` Julia Version 1.5.1 Commit 697e782ab8 (2020-08-25 20:08 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1023-azure #23~18.04.1-Ubuntu SMP Thu Aug 20 14:46:48 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 12716 s 0 s 1796 s 34356 s 0 s #2 2294 MHz 26127 s 0 s 3398 s 19973 s 0 s Memory: 6.791393280029297 GB (2623.72265625 MB free) Uptime: 513.0 sec Load Avg: 1.00537109375 0.89306640625 0.484375 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, broadwell) ``` ### Baseline ``` Julia Version 1.5.1 Commit 697e782ab8 (2020-08-25 20:08 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1023-azure #23~18.04.1-Ubuntu SMP Thu Aug 20 14:46:48 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 33318 s 0 s 3384 s 36198 s 0 s #2 2294 MHz 28083 s 0 s 3481 s 41961 s 0 s Memory: 6.791393280029297 GB (2357.87109375 MB free) Uptime: 754.0 sec Load Avg: 1.07861328125 1.00439453125 0.6328125 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, broadwell) ``` --- # Target result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 13 Sep 2020 - 4:5 * Package commit: 2b7a94 * Julia commit: 697e78 * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------------------|----------------:|-----------:|----------------:|------------:| | `["coboundary", "full, no threshold"]` | 6.189 s (5%) | | | | | `["coboundary", "full, threshold=1"]` | 3.791 s (5%) | | | | | `["coboundary", "sparse, 25% full"]` | 186.196 ms (5%) | | | | | `["coboundary", "sparse, 50% full"]` | 932.660 ms (5%) | | | | | `["coboundary", "sparse, 75% full"]` | 1.442 s (5%) | | | | | `["image", "bonsai"]` | 2.164 s (5%) | | 214.01 MiB (1%) | 1311900 | | `["image", "hubble"]` | 5.329 s (5%) | 205.766 ms | 1.63 GiB (1%) | 30880976 | | `["sparse", "20 tori with 100 points, dim_max=2, modulus=3"]` | 5.016 s (5%) | | 568.90 MiB (1%) | 614108 | | `["sparse", "20 tori with 300 points, dim_max=1, modulus=3"]` | 7.534 s (5%) | | 293.46 MiB (1%) | 1024632 | | `["sparse", "20 tori with 50 points, dim_max=3, modulus=2"]` | 6.730 s (5%) | 16.920 ms | 657.54 MiB (1%) | 1053348 | | `["sparse", "30 tori with 200 points, dim_max=1, modulus=2"]` | 2.841 s (5%) | | 155.81 MiB (1%) | 708428 | | `["torus", "n=1024, dim_max=1, modulus=2, threshold=1"]` | 9.725 s (5%) | | 429.67 MiB (1%) | 154966 | | `["torus", "n=1024, dim_max=1, modulus=7, threshold=nothing"]` | 35.848 s (5%) | 20.378 ms | 1.47 GiB (1%) | 508126 | | `["torus", "n=256, dim_max=2, modulus=2, threshold=nothing"]` | 2.790 s (5%) | | 318.34 MiB (1%) | 31393 | | `["torus", "n=256, dim_max=2, modulus=7, threshold=1"]` | 1.847 s (5%) | | 188.45 MiB (1%) | 32315 | | `["torus", "n=64, dim_max=4, modulus=2, threshold=nothing"]` | 5.849 s (5%) | 19.288 ms | 684.78 MiB (1%) | 1915824 | | `["torus", "n=81, dim_max=4, modulus=3, threshold=1"]` | 7.692 s (5%) | 34.334 ms | 757.85 MiB (1%) | 3588012 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["coboundary"]` - `["image"]` - `["sparse"]` - `["torus"]` ## Julia versioninfo ``` Julia Version 1.5.1 Commit 697e782ab8 (2020-08-25 20:08 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1023-azure #23~18.04.1-Ubuntu SMP Thu Aug 20 14:46:48 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 12716 s 0 s 1796 s 34356 s 0 s #2 2294 MHz 26127 s 0 s 3398 s 19973 s 0 s Memory: 6.791393280029297 GB (2623.72265625 MB free) Uptime: 513.0 sec Load Avg: 1.00537109375 0.89306640625 0.484375 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, broadwell) ``` --- # Baseline result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 13 Sep 2020 - 4:9 * Package commit: 594a76 * Julia commit: 697e78 * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------------------|----------------:|-----------:|----------------:|------------:| | `["coboundary", "full, no threshold"]` | 5.841 s (5%) | | | | | `["coboundary", "full, threshold=1"]` | 3.561 s (5%) | | | | | `["coboundary", "sparse, 25% full"]` | 188.342 ms (5%) | | | | | `["coboundary", "sparse, 50% full"]` | 969.664 ms (5%) | | | | | `["coboundary", "sparse, 75% full"]` | 1.503 s (5%) | | | | | `["image", "bonsai"]` | 2.262 s (5%) | 50.636 ms | 214.01 MiB (1%) | 1311900 | | `["image", "hubble"]` | 5.735 s (5%) | 293.629 ms | 1.63 GiB (1%) | 30825232 | | `["sparse", "20 tori with 100 points, dim_max=2, modulus=3"]` | 5.218 s (5%) | 12.004 ms | 570.71 MiB (1%) | 789291 | | `["sparse", "20 tori with 300 points, dim_max=1, modulus=3"]` | 7.534 s (5%) | | 319.24 MiB (1%) | 2786833 | | `["sparse", "20 tori with 50 points, dim_max=3, modulus=2"]` | 6.570 s (5%) | 11.224 ms | 655.84 MiB (1%) | 1056912 | | `["sparse", "30 tori with 200 points, dim_max=1, modulus=2"]` | 3.044 s (5%) | | 174.08 MiB (1%) | 1902434 | | `["torus", "n=1024, dim_max=1, modulus=2, threshold=1"]` | 10.569 s (5%) | | 421.60 MiB (1%) | 152908 | | `["torus", "n=1024, dim_max=1, modulus=7, threshold=nothing"]` | 35.202 s (5%) | 17.897 ms | 1.46 GiB (1%) | 501215 | | `["torus", "n=256, dim_max=2, modulus=2, threshold=nothing"]` | 2.946 s (5%) | 10.518 ms | 317.82 MiB (1%) | 30872 | | `["torus", "n=256, dim_max=2, modulus=7, threshold=1"]` | 1.901 s (5%) | | 187.94 MiB (1%) | 31794 | | `["torus", "n=64, dim_max=4, modulus=2, threshold=nothing"]` | 5.647 s (5%) | 18.993 ms | 681.97 MiB (1%) | 1861355 | | `["torus", "n=81, dim_max=4, modulus=3, threshold=1"]` | 8.096 s (5%) | 33.153 ms | 754.82 MiB (1%) | 3531720 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["coboundary"]` - `["image"]` - `["sparse"]` - `["torus"]` ## Julia versioninfo ``` Julia Version 1.5.1 Commit 697e782ab8 (2020-08-25 20:08 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1023-azure #23~18.04.1-Ubuntu SMP Thu Aug 20 14:46:48 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 33318 s 0 s 3384 s 36198 s 0 s #2 2294 MHz 28083 s 0 s 3481 s 41961 s 0 s Memory: 6.791393280029297 GB (2357.87109375 MB free) Uptime: 754.0 sec Load Avg: 1.07861328125 1.00439453125 0.6328125 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, broadwell) ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 2 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian CPU(s): 2 On-line CPU(s) list: 0,1 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 NUMA node(s): 1 Vendor ID: GenuineIntel CPU family: 6 Model: 79 Model name: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz Stepping: 1 CPU MHz: 2294.682 BogoMIPS: 4589.36 Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 32K L1i cache: 32K L2 cache: 256K L3 cache: 51200K NUMA node0 CPU(s): 0,1 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm rdseed adx smap xsaveopt md_clear | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz | | Vendor | :Intel | | Architecture | :Broadwell | | Model | Family: 0x06, Model: 0x4f, Stepping: 0x01, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 256, 51200) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 46 bits physical | | SIMD | 256 bit = 32 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |
github-actions[bot] commented 4 years ago
Benchmark result # Judge result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmarks: - Target: 13 Sep 2020 - 09:33 - Baseline: 13 Sep 2020 - 09:37 * Package commits: - Target: 6dd8a5 - Baseline: 594a76 * Julia commits: - Target: 697e78 - Baseline: 697e78 * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |----------------------------------------------------------------|------------------------------|------------------------------| | `["coboundary", "sparse, 25% full"]` | 0.93 (5%) :white_check_mark: | 1.00 (1%) | | `["coboundary", "sparse, 50% full"]` | 0.81 (5%) :white_check_mark: | 1.00 (1%) | | `["coboundary", "sparse, 75% full"]` | 0.91 (5%) :white_check_mark: | 1.00 (1%) | | `["image", "hubble"]` | 1.50 (5%) :x: | 1.06 (1%) :x: | | `["sparse", "20 tori with 100 points, dim_max=2, modulus=3"]` | 0.95 (5%) :white_check_mark: | 0.99 (1%) | | `["sparse", "20 tori with 300 points, dim_max=1, modulus=3"]` | 1.00 (5%) | 0.92 (1%) :white_check_mark: | | `["sparse", "30 tori with 200 points, dim_max=1, modulus=2"]` | 0.97 (5%) | 0.90 (1%) :white_check_mark: | | `["torus", "n=1024, dim_max=1, modulus=2, threshold=1"]` | 0.93 (5%) :white_check_mark: | 1.02 (1%) :x: | | `["torus", "n=1024, dim_max=1, modulus=7, threshold=nothing"]` | 1.07 (5%) :x: | 1.01 (1%) | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["coboundary"]` - `["image"]` - `["sparse"]` - `["torus"]` ## Julia versioninfo ### Target ``` Julia Version 1.5.1 Commit 697e782ab8 (2020-08-25 20:08 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1023-azure #23~18.04.1-Ubuntu SMP Thu Aug 20 14:46:48 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 24478 s 0 s 2581 s 15642 s 0 s #2 2095 MHz 11222 s 0 s 2588 s 28913 s 0 s Memory: 6.791393280029297 GB (2733.07421875 MB free) Uptime: 445.0 sec Load Avg: 1.17431640625 0.943359375 0.49072265625 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512) ``` ### Baseline ``` Julia Version 1.5.1 Commit 697e782ab8 (2020-08-25 20:08 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1023-azure #23~18.04.1-Ubuntu SMP Thu Aug 20 14:46:48 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 44664 s 0 s 4103 s 16559 s 0 s #2 2095 MHz 12160 s 0 s 2696 s 50449 s 0 s Memory: 6.791393280029297 GB (2477.4296875 MB free) Uptime: 672.0 sec Load Avg: 1.00927734375 1.0 0.6259765625 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512) ``` --- # Target result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 13 Sep 2020 - 9:33 * Package commit: 6dd8a5 * Julia commit: 697e78 * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------------------|----------------:|-----------:|----------------:|------------:| | `["coboundary", "full, no threshold"]` | 5.435 s (5%) | | | | | `["coboundary", "full, threshold=1"]` | 3.703 s (5%) | | | | | `["coboundary", "sparse, 25% full"]` | 179.105 ms (5%) | | | | | `["coboundary", "sparse, 50% full"]` | 943.820 ms (5%) | | | | | `["coboundary", "sparse, 75% full"]` | 1.221 s (5%) | | | | | `["image", "bonsai"]` | 2.219 s (5%) | | 214.01 MiB (1%) | 1311900 | | `["image", "hubble"]` | 5.080 s (5%) | 192.634 ms | 1.63 GiB (1%) | 30881097 | | `["sparse", "20 tori with 100 points, dim_max=2, modulus=3"]` | 4.041 s (5%) | 11.788 ms | 552.53 MiB (1%) | 305304 | | `["sparse", "20 tori with 300 points, dim_max=1, modulus=3"]` | 7.490 s (5%) | | 293.46 MiB (1%) | 1024652 | | `["sparse", "20 tori with 50 points, dim_max=3, modulus=2"]` | 6.193 s (5%) | 13.791 ms | 657.54 MiB (1%) | 1053391 | | `["sparse", "30 tori with 200 points, dim_max=1, modulus=2"]` | 2.882 s (5%) | | 155.81 MiB (1%) | 708428 | | `["torus", "n=1024, dim_max=1, modulus=2, threshold=1"]` | 9.436 s (5%) | | 429.67 MiB (1%) | 154965 | | `["torus", "n=1024, dim_max=1, modulus=7, threshold=nothing"]` | 35.477 s (5%) | 14.574 ms | 1.47 GiB (1%) | 508148 | | `["torus", "n=256, dim_max=2, modulus=2, threshold=nothing"]` | 2.729 s (5%) | 7.965 ms | 318.34 MiB (1%) | 31393 | | `["torus", "n=256, dim_max=2, modulus=7, threshold=1"]` | 1.835 s (5%) | | 188.45 MiB (1%) | 32315 | | `["torus", "n=64, dim_max=4, modulus=2, threshold=nothing"]` | 5.113 s (5%) | 16.372 ms | 684.79 MiB (1%) | 1915912 | | `["torus", "n=81, dim_max=4, modulus=3, threshold=1"]` | 7.303 s (5%) | 25.987 ms | 757.85 MiB (1%) | 3588327 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["coboundary"]` - `["image"]` - `["sparse"]` - `["torus"]` ## Julia versioninfo ``` Julia Version 1.5.1 Commit 697e782ab8 (2020-08-25 20:08 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1023-azure #23~18.04.1-Ubuntu SMP Thu Aug 20 14:46:48 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 24478 s 0 s 2581 s 15642 s 0 s #2 2095 MHz 11222 s 0 s 2588 s 28913 s 0 s Memory: 6.791393280029297 GB (2733.07421875 MB free) Uptime: 445.0 sec Load Avg: 1.17431640625 0.943359375 0.49072265625 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512) ``` --- # Baseline result # Benchmark Report for */home/runner/work/Ripserer.jl/Ripserer.jl* ## Job Properties * Time of benchmark: 13 Sep 2020 - 9:37 * Package commit: 594a76 * Julia commit: 697e78 * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |----------------------------------------------------------------|----------------:|-----------:|----------------:|------------:| | `["coboundary", "full, no threshold"]` | 5.292 s (5%) | | | | | `["coboundary", "full, threshold=1"]` | 3.792 s (5%) | | | | | `["coboundary", "sparse, 25% full"]` | 192.912 ms (5%) | | | | | `["coboundary", "sparse, 50% full"]` | 1.167 s (5%) | | | | | `["coboundary", "sparse, 75% full"]` | 1.341 s (5%) | | | | | `["image", "bonsai"]` | 2.198 s (5%) | 39.604 ms | 214.01 MiB (1%) | 1311900 | | `["image", "hubble"]` | 3.392 s (5%) | 288.432 ms | 1.54 GiB (1%) | 29005780 | | `["sparse", "20 tori with 100 points, dim_max=2, modulus=3"]` | 4.274 s (5%) | 9.610 ms | 555.57 MiB (1%) | 503309 | | `["sparse", "20 tori with 300 points, dim_max=1, modulus=3"]` | 7.499 s (5%) | | 319.24 MiB (1%) | 2786854 | | `["sparse", "20 tori with 50 points, dim_max=3, modulus=2"]` | 6.150 s (5%) | 9.616 ms | 655.85 MiB (1%) | 1056963 | | `["sparse", "30 tori with 200 points, dim_max=1, modulus=2"]` | 2.961 s (5%) | | 174.08 MiB (1%) | 1902434 | | `["torus", "n=1024, dim_max=1, modulus=2, threshold=1"]` | 10.149 s (5%) | | 421.60 MiB (1%) | 152908 | | `["torus", "n=1024, dim_max=1, modulus=7, threshold=nothing"]` | 33.107 s (5%) | 14.088 ms | 1.46 GiB (1%) | 501239 | | `["torus", "n=256, dim_max=2, modulus=2, threshold=nothing"]` | 2.610 s (5%) | 7.985 ms | 317.82 MiB (1%) | 30872 | | `["torus", "n=256, dim_max=2, modulus=7, threshold=1"]` | 1.751 s (5%) | | 187.94 MiB (1%) | 31794 | | `["torus", "n=64, dim_max=4, modulus=2, threshold=nothing"]` | 5.244 s (5%) | 16.611 ms | 681.98 MiB (1%) | 1861444 | | `["torus", "n=81, dim_max=4, modulus=3, threshold=1"]` | 7.117 s (5%) | 25.211 ms | 754.82 MiB (1%) | 3532041 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["coboundary"]` - `["image"]` - `["sparse"]` - `["torus"]` ## Julia versioninfo ``` Julia Version 1.5.1 Commit 697e782ab8 (2020-08-25 20:08 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 18.04.5 LTS uname: Linux 5.4.0-1023-azure #23~18.04.1-Ubuntu SMP Thu Aug 20 14:46:48 UTC 2020 x86_64 x86_64 CPU: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz: speed user nice sys idle irq #1 2095 MHz 44664 s 0 s 4103 s 16559 s 0 s #2 2095 MHz 12160 s 0 s 2696 s 50449 s 0 s Memory: 6.791393280029297 GB (2477.4296875 MB free) Uptime: 672.0 sec Load Avg: 1.00927734375 1.0 0.6259765625 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512) ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 2 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian CPU(s): 2 On-line CPU(s) list: 0,1 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 NUMA node(s): 1 Vendor ID: GenuineIntel CPU family: 6 Model: 85 Model name: Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz Stepping: 4 CPU MHz: 2095.081 BogoMIPS: 4190.16 Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 32K L1i cache: 32K L2 cache: 1024K L3 cache: 36608K NUMA node0 CPU(s): 0,1 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm mpx avx512f avx512dq rdseed adx smap clflushopt avx512cd avx512bw avx512vl xsaveopt xsavec xsaves md_clear | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz | | Vendor | :Intel | | Architecture | :Skylake | | Model | Family: 0x06, Model: 0x55, Stepping: 0x04, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 1024, 36608) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 46 bits physical | | SIMD | 512 bit = 64 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |