Open MixoMax opened 10 months ago
When i try to visualize my collection, the /data endpoint causes a 500 server error:
INFO:werkzeug:127.0.0.1 - - [25/Oct/2023 12:58:07] "GET [/data](https://file+.vscode-resource.vscode-cdn.net/data) HTTP/1.1" 500 - 0 1 2 3 4 5 6 \ 0 0.037332 -0.023781 0.012198 -0.005240 0.076604 0.001155 -0.014276 1 0.030470 -0.003900 -0.015485 -0.023972 0.063941 -0.060111 -0.014092 2 -0.053416 -0.008176 -0.002372 0.051473 0.060097 0.035009 0.016631 3 -0.056681 -0.026865 -0.034603 0.030002 0.042702 -0.028928 0.020197 4 0.013042 -0.042856 -0.013761 0.036834 0.030365 0.038543 -0.010759 5 0.005877 -0.042724 -0.027274 0.010114 0.023459 -0.004595 -0.005909 6 -0.066772 0.006261 -0.047721 0.008414 0.056853 -0.047925 -0.010367 7 -0.059567 -0.039042 0.000922 -0.001134 0.023288 -0.046869 -0.016602 8 -0.042325 -0.032608 -0.000407 0.018782 0.053377 -0.056314 0.030714 9 -0.028975 0.032526 -0.045487 0.055819 0.010403 0.034379 0.063932 10 -0.048563 -0.029803 -0.039211 0.046758 0.066782 -0.002995 0.059443 11 -0.078533 -0.034406 -0.018979 0.073978 0.067306 0.023627 -0.016573 12 -0.040124 0.056453 -0.016754 -0.019866 0.001475 -0.035780 -0.007667 13 0.018375 0.076316 -0.025173 -0.010658 -0.025128 -0.022667 0.035033 14 0.030359 0.016650 0.029888 -0.049801 -0.043548 0.065044 0.029868 15 0.013895 0.032976 -0.025223 0.032685 0.038733 0.007347 0.035505 16 -0.032058 0.079850 0.034362 -0.065866 -0.036254 -0.070180 0.023393 17 -0.050679 0.043993 -0.074905 -0.004738 -0.025914 -0.052690 0.034850 18 0.001749 0.004550 -0.036564 -0.070386 -0.052163 -0.057619 0.035614 19 0.036063 0.070261 -0.053000 -0.037017 -0.036630 0.010571 0.066405 20 0.024235 0.063356 -0.054793 -0.029787 -0.020596 -0.071459 0.033064 21 -0.059592 0.041362 -0.036292 0.007127 0.012279 0.014098 -0.052634 22 -0.060635 0.073746 -0.043353 0.046178 0.000276 -0.031570 0.018131 23 0.025379 -0.029765 0.002895 -0.017975 -0.038120 0.061182 0.008354 24 -0.065203 0.037062 -0.025169 -0.043031 -0.002735 -0.039980 0.004093 25 0.004894 0.055953 0.011643 0.046046 0.015779 0.065883 0.038230 26 -0.024362 -0.035757 -0.019241 0.026651 0.039099 -0.065665 -0.016519 27 -0.027676 0.026229 -0.044375 -0.000928 -0.007377 -0.066107 0.018930 28 -0.072507 0.018927 0.003620 0.060673 0.030222 0.052429 0.030121 29 0.054735 0.068607 -0.073256 -0.002494 0.046521 -0.029290 0.022471 30 -0.037575 0.011722 -0.030505 0.072252 0.074436 -0.019824 0.038547 31 0.046324 0.012548 -0.041335 0.034979 0.030446 0.023014 -0.023115 32 0.009296 -0.021602 -0.057132 0.026589 -0.027671 -0.023843 -0.054125 33 -0.047493 -0.036450 -0.013627 0.052395 0.047732 -0.058966 -0.037612 7 8 9 ... 502 503 504 505 \ 0 0.008024 0.060044 0.029361 ... -0.009279 -0.023715 -0.015751 -0.013304 1 -0.010978 0.043185 0.020901 ... -0.005410 0.003037 -0.011462 -0.064343 2 -0.015547 0.042151 0.037624 ... 0.023804 0.029791 0.024964 -0.040885 3 -0.013639 0.034665 0.020015 ... 0.006872 0.048773 0.039655 -0.069227 4 -0.016177 0.068578 0.003459 ... -0.024571 0.062359 -0.006766 -0.036526 5 -0.027050 0.058815 0.005194 ... -0.025979 0.069981 0.013728 -0.056290 6 -0.033108 -0.060129 0.007087 ... -0.023777 0.030056 0.005010 -0.052337 7 -0.017220 0.020616 0.005380 ... 0.014116 0.054109 -0.018877 -0.018004 8 -0.058906 -0.071288 -0.084879 ... 0.043875 0.021019 -0.010141 -0.073011 9 -0.015690 -0.089544 0.004032 ... 0.008158 0.077191 0.005024 -0.069949 10 -0.051377 -0.079748 -0.077363 ... -0.047476 0.024338 0.006369 -0.085023 11 -0.007470 -0.038817 0.026817 ... -0.071988 0.055395 0.064981 0.030653 12 0.020591 0.080325 0.060433 ... 0.053331 0.065969 -0.036978 -0.083878 13 -0.056395 0.054601 0.033762 ... 0.049224 0.047197 -0.053725 -0.028474 14 0.033852 0.057624 -0.045598 ... 0.000804 0.065920 -0.030025 -0.081059 15 -0.026954 0.043701 0.016701 ... 0.002854 0.059009 -0.072334 -0.034390 16 -0.051204 0.077887 -0.048077 ... 0.039129 0.037951 -0.033659 0.012854 17 -0.011362 0.036235 -0.058835 ... 0.034847 0.072305 0.048777 -0.075487 18 -0.015401 -0.053733 -0.057567 ... 0.017474 0.069098 -0.049530 -0.075420 19 -0.022096 0.072510 -0.056408 ... 0.057827 0.062493 -0.038635 -0.046401 20 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0.071013 -0.040185 0.022621 -0.061165 506 507 508 509 510 511 0 0.007775 -0.095998 -0.046793 0.030200 0.045731 -0.027019 1 0.016610 -0.087086 -0.051602 0.030389 0.050576 -0.020754 2 0.039993 -0.092495 -0.058261 0.019242 0.042531 -0.030493 3 0.041741 -0.090846 -0.063663 0.012026 0.042810 -0.027029 4 0.015731 -0.099377 -0.049119 0.021458 0.022096 0.000982 5 0.017304 -0.092860 -0.059497 0.024467 0.036667 0.002914 6 0.026571 -0.086814 0.005377 0.014170 0.040233 -0.012169 7 0.031023 -0.082871 0.003966 0.007463 0.036262 0.039472 8 0.026039 -0.086807 -0.044998 0.007627 0.055528 -0.036907 9 0.052685 -0.088993 -0.023056 0.025650 0.039750 0.005575 10 0.022355 -0.081196 -0.000355 0.011888 0.037407 0.002402 11 0.007430 -0.080597 0.009811 0.044425 0.006977 -0.010428 12 0.058908 -0.076054 -0.000748 -0.018091 0.070045 0.058598 13 0.047309 -0.060535 -0.035036 0.030780 0.076246 0.051501 14 0.048645 0.073527 0.032925 0.029199 0.020705 0.075084 15 -0.025052 -0.071407 -0.048819 0.026808 0.000149 0.037452 16 -0.083757 -0.071528 0.044818 0.013089 -0.021773 0.052537 17 0.015151 -0.082091 -0.002808 0.005803 0.048171 -0.060211 18 -0.006031 0.071764 -0.020130 -0.015293 0.015983 0.026699 19 0.049587 -0.072828 -0.028956 0.002941 0.022244 0.012457 20 0.071769 -0.058493 -0.025794 0.005382 0.058536 0.047511 21 0.000378 -0.085529 0.000841 0.046993 0.046224 -0.028370 22 0.035358 -0.084977 -0.026532 0.015352 0.052120 0.036663 23 -0.003215 0.004681 0.068580 -0.013297 0.009633 -0.045675 24 -0.029970 -0.087881 0.022975 0.003078 0.021798 0.013759 25 0.073087 0.000363 0.032176 0.015431 -0.035607 0.041946 26 0.051575 -0.059862 0.026390 0.048598 0.036532 0.041015 27 0.028671 -0.078497 0.024266 0.048963 0.017075 0.020607 28 -0.067752 -0.092406 0.032862 0.055852 -0.001208 0.055984 29 0.043003 -0.068191 0.020234 0.057081 -0.039051 0.028884 30 0.038409 -0.076699 0.053538 0.017457 0.037722 0.002966 31 0.017005 -0.087661 -0.003598 -0.023067 -0.009526 0.014693 32 -0.081903 -0.078386 -0.031118 0.056724 -0.039457 0.038010 33 0.001368 -0.077690 0.047063 0.054346 0.051049 -0.025174 [34 rows x 512 columns] Size of the dataframe: (34, 512) ERROR:chromaviz.visualize:Exception on [/data](https://file+.vscode-resource.vscode-cdn.net/data) [GET] Traceback (most recent call last): File "/home/linus/.local/lib/python3.10/site-packages/flask/app.py", line 1455, in wsgi_app response = self.full_dispatch_request() File "/home/linus/.local/lib/python3.10/site-packages/flask/app.py", line 869, in full_dispatch_request rv = self.handle_user_exception(e) File "/home/linus/.local/lib/python3.10/site-packages/flask_cors/extension.py", line 176, in wrapped_function return cors_after_request(app.make_response(f(*args, **kwargs))) File "/home/linus/.local/lib/python3.10/site-packages/flask/app.py", line 867, in full_dispatch_request rv = self.dispatch_request() File "/home/linus/.local/lib/python3.10/site-packages/flask/app.py", line 852, in dispatch_request return self.ensure_sync(self.view_functions[rule.endpoint])(**view_args) File "/home/linus/.local/lib/python3.10/site-packages/chromaviz/visualize.py", line 59, in data_api pca_result_50 = pca_50.fit_transform(df) File "/home/linus/.local/lib/python3.10/site-packages/sklearn/utils/_set_output.py", line 157, in wrapped data_to_wrap = f(self, X, *args, **kwargs) File "/home/linus/.local/lib/python3.10/site-packages/sklearn/base.py", line 1152, in wrapper return fit_method(estimator, *args, **kwargs) File "/home/linus/.local/lib/python3.10/site-packages/sklearn/decomposition/_pca.py", line 460, in fit_transform U, S, Vt = self._fit(X) File "/home/linus/.local/lib/python3.10/site-packages/sklearn/decomposition/_pca.py", line 510, in _fit return self._fit_full(X, n_components) File "/home/linus/.local/lib/python3.10/site-packages/sklearn/decomposition/_pca.py", line 524, in _fit_full raise ValueError( ValueError: n_components=50 must be between 0 and min(n_samples, n_features)=34 with svd_solver='full'
I am facing the same issue.
When i try to visualize my collection, the /data endpoint causes a 500 server error: