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muellan / metacache

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
GNU General Public License v3.0
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Enhancement: Provide NCBI taxids in output #3

Closed sjaenick closed 6 years ago

sjaenick commented 6 years ago

The rank/tax. name combination is not necessarily unique; would it be possible to include NCBI taxids as an additional output column?

muellan commented 6 years ago

You mean for the mapping result? With the command line argument "-taxids" the NCBI taxon id will be printed in parenthesis after the rank and name. With "-taxids-only" it will print "rank:taxid".

sjaenick commented 6 years ago

perfect, thanks