filter results by ptms - Githubissues

multiomics / mslookup

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filter results by ptms #4

Open ypriverol opened 4 years ago

ypriverol commented 4 years ago

The peptide sequences can be filtered by PTMs, you can search by a pattern expression and also a PTM see documentation here https://spectra-ws.readthedocs.io/en/latest/find_ptm.html

For that, the user can provide a PTM position or not, a monoisotopic mass, and a name. I think we will need a drop-down that load that data from unimod (https://www.npmjs.com/package/js-unimod) where all possible modifications are stored. If the user picks one modification, then you query using that modification.

shabai517 commented 4 years ago

Need more explanation...

ypriverol commented 3 years ago

@shabai517 it should be possible to search without filtering or filtering for only specific filters like searching only by:

geneAccessions.

or by geneAccessions and ptms.