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mummer4 / mummer

Mummer alignment tool
Artistic License 2.0
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terminate called after throwing an instance of 'std::length_error #208

Open fka21 opened 8 months ago

fka21 commented 8 months ago

Hello!

I have encountered an error while running nucmer (most recent version) recently:

Here is the command used: nucmer -t 20 -p nucmer.hifiasm_hic_hap2_scaffolds_final_to_hifiasm_hic_hap1_scaffolds_final.l100.c500/nucmer.hifiasm_hic_hap2_scaffolds_final_to_hifiasm_hic_hap1_scaffolds_final.l100.c500 --maxmatch -l 100 -c 500 sSmed_assembly/07_Scaffolding/bwa_yahs/3_scaffolding/hifiasm_hic_hap1_scaffolds_final.fa sSmed_assembly/07_Scaffolding/bwa_yahs/3_scaffolding/hifiasm_hic_hap2_scaffolds_final.fa

For a while it is running and afterwards I get the following error message: terminate called after throwing an instance of "std::length_error" what(): vector::_M_fill_insert

Interestingly the same command ran without errors on the same assemblies prior to scaffolding.

Any help would be greatly appreciated.

Cheers, Ferenc

DayTimeMouse commented 3 weeks ago

Hi,

I have the same issue. Do you have any ideas for this?

Thanks in advance.